ggKbase home page

GD18-4_B1_scaffold_44781_92

Organism: GD2018-4_B1_QB3_180703_Deltaproteobacteria_71_13

near complete RP 44 / 55 MC: 2 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: comp(93631..95205)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E612_GEOLS similarity UNIREF
DB: UNIREF100
  • Identity: 42.0
  • Coverage: 579.0
  • Bit_score: 419
  • Evalue 4.60e-114
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.7
  • Coverage: 574.0
  • Bit_score: 421
  • Evalue 1.30e-114
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 42.0
  • Coverage: 579.0
  • Bit_score: 419
  • Evalue 1.30e-114

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Geoalkalibacter ferrihydriticus → Geoalkalibacter → Desulfuromonadales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1575
ATGAAGAAGTCCTCCGCAGCCGCCAGGTCCACTGAAGCCGTCGCCGATTCCACGCCGACCGAGAAGCTCATCGAGCTCGGCCGTACCCGTGGATGGGTCACCTACGAGGAGCTCGACGCCGCGATCCCGCGCGAGGTCACCACGGAGGGACCGGTCGACGACGTGATGTCGTTGCTCGAGGGCGCGCAGATCCGCGTCGTCGACGAGCCGCCGTCCGCGCCCGTGTCGCGCCTGGTCGCCTCGCTGCCCGAGGGCACCGCGGTCGCCGAGGAGGACGACGAGTCGAGCGACGCGCTCACCAGCTACTTCCGCCGCATGGCGCGCCGCGAGGTGCTCGATCGGCAGGGTGAGGTCGAGATCGCCCAGCGCATGGAGACGGGCGAGCGCAAGCTGCTGCTCGCCATCCTGCGGACGACCTGGGGCCTCGAGCACCTCATCGAGCTGGGCGATCGCGTCGAGCGCGGCGAGCAGCGCGTGACCACCATCGTGCGCGAGCAGGACGACGATCCCGACTTCGACGAGGCGGCGATCGAGCAGCGCGTGCGCGAGGCCACGGCGGTGCTGCGCAAGGTCCAGAAGAAGCTGGCCAACGCGCGCAAGAGCGGGTCGACCACGGCCCGCGCCGCCGCGCTGCAAGACCTGTCGGGCGCCGTCACGCTGCTCAAGATGGGCAAGCGCACGACCGAGCAGCTCGTCGCCAAGTTCCACGAGGTCGTGCGCAAGGCGTCGAGCGACGACGGTCGCGCGCGCGGCTCGGCCGACCGTGCCGCCATCGAGCGCGCCCTCGGCGTCGATCGCGACGAGCTCCGCGCCATCGAGCGCGAGATCCGCGAAGGGCAGCGCACCTACCAGCGCGCGAAGGACGAGCTCATCGAGGCGAACCTCCGCCTGGTGGTCTCCATCGCCAAGCGCTTCCGCAACCGCGGCCTGCACCTGCTCGACCTCGTGCAGGAGGGCAACATCGGCCTCATGCGCGCCGTCGAGAAGTTCGAGTGGCAGCGCGGCTACAAGTTCAGCACCTACGCCACGTGGTGGATCCGCCAGGCGGTGAGCCGCGCGCTCGCCGATCAGTCGCGCACGATCCGCCTGCCGGTGCACCTGCTCGAGACCATGAACAAGGTGCTCGGCGCGGCGCGCGGGCTGAGCCAGGAGCTCGGGCGCGACCCGCTTCCCGAGGAGATCGCCGCTCGCGTCGATCTCCCGCTCGAGAAGGTGCGCGGCGTGCTCGGCGTCTCCAAGGAGCCGGTCTCGCTGCAGGCGCCGATGGGCGAAGAGGGCGACGCCGAGCTCGGCGACCTGGTCGCCGACGACCAGGCGCTCGATCCGGGCGACGCGAGCATCGAGGAGCAGCGCGCGCGTCACGCACGCGAGGCTCTCGCCACGCTGACGCCGCGCGAAGAGAAGGTCCTGCGCCTGCGCTTCGGCATCGACGAGAAGGGCGACCACACGCTCGAAGAGGTCGGCCAGATGTTCGAGGTCACCCGCGAGCGCGTCCGGCAGATCGAGGCCAAGGCGCTCCGCAAGCTGCGGCACCCGCGCTACGCGAAGAGGCTTCGGCCGTACATCGAGGGGTGA
PROTEIN sequence
Length: 525
MKKSSAAARSTEAVADSTPTEKLIELGRTRGWVTYEELDAAIPREVTTEGPVDDVMSLLEGAQIRVVDEPPSAPVSRLVASLPEGTAVAEEDDESSDALTSYFRRMARREVLDRQGEVEIAQRMETGERKLLLAILRTTWGLEHLIELGDRVERGEQRVTTIVREQDDDPDFDEAAIEQRVREATAVLRKVQKKLANARKSGSTTARAAALQDLSGAVTLLKMGKRTTEQLVAKFHEVVRKASSDDGRARGSADRAAIERALGVDRDELRAIEREIREGQRTYQRAKDELIEANLRLVVSIAKRFRNRGLHLLDLVQEGNIGLMRAVEKFEWQRGYKFSTYATWWIRQAVSRALADQSRTIRLPVHLLETMNKVLGAARGLSQELGRDPLPEEIAARVDLPLEKVRGVLGVSKEPVSLQAPMGEEGDAELGDLVADDQALDPGDASIEEQRARHAREALATLTPREEKVLRLRFGIDEKGDHTLEEVGQMFEVTRERVRQIEAKALRKLRHPRYAKRLRPYIEG*