| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPV7_THISH (db=UNIREF evalue=0.0 bit_score=689.0 identity=66.86 coverage=98.12734082397) | similarity |
UNIREF
DB: UNIREF |
66.86 | 98.13 | 689 | 0.0 | tgr:Tgr7_3035 |
| RNA polymerase sigma-70 subunit RpoD | similarity |
KEGG
DB: KEGG |
66.6 | 533.0 | 685 | 1.30e-194 | tgr:Tgr7_3035 |
| RNA polymerase sigma-70 subunit RpoD | rbh |
KEGG
DB: KEGG |
66.6 | 533.0 | 685 | 1.30e-194 | tgr:Tgr7_3035 |
| seg (db=Seg db_id=seg from=87 to=98) | iprscan |
interpro
DB: Seg |
null | null | null | null | tgr:Tgr7_3035 |
| coiled-coil (db=Coil db_id=coil from=491 to=512 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | tgr:Tgr7_3035 |
| coiled-coil (db=Coil db_id=coil from=262 to=297 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | tgr:Tgr7_3035 |
| coiled-coil (db=Coil db_id=coil from=186 to=207 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | tgr:Tgr7_3035 |
| seg (db=Seg db_id=seg from=102 to=130) | iprscan |
interpro
DB: Seg |
null | null | null | null | tgr:Tgr7_3035 |
| SIGMA70_2 (db=PatternScan db_id=PS00716 from=490 to=516 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | tgr:Tgr7_3035 |
| SIGMA70_1 (db=PatternScan db_id=PS00715 from=321 to=334 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | tgr:Tgr7_3035 |
| RpoD_Cterm: RNA polymerase sigma factor R (db=HMMTigr db_id=TIGR02393 from=293 to=530 evalue=1.0e-177 interpro_id=IPR012760 interpro_description=RNA polymerase sigma factor RpoD, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.00e-177 | tgr:Tgr7_3035 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=26 to=366 evalue=4.5e-113) | iprscan |
interpro
DB: Gene3D |
null | null | null | 4.50e-113 | tgr:Tgr7_3035 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=29 to=364 evalue=3.9e-100 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.90e-100 | tgr:Tgr7_3035 |
| Sigma70_ner (db=HMMPfam db_id=PF04546 from=54 to=266 evalue=8.0e-59 interpro_id=IPR007631 interpro_description=RNA polymerase sigma factor 70, non-essential region GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.00e-59 | tgr:Tgr7_3035 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=292 to=520 evalue=2.6e-32 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 2.60e-32 | tgr:Tgr7_3035 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=345 to=353 evalue=1.6e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.60e-31 | tgr:Tgr7_3035 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=505 to=516 evalue=1.6e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.60e-31 | tgr:Tgr7_3035 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=490 to=505 evalue=1.6e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.60e-31 | tgr:Tgr7_3035 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=469 to=481 evalue=1.6e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.60e-31 | tgr:Tgr7_3035 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=321 to=334 evalue=1.6e-31 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 1.60e-31 | tgr:Tgr7_3035 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=427 to=531 evalue=1.4e-27 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.40e-27 | tgr:Tgr7_3035 |
| Sigma70_r3 (db=HMMPfam db_id=PF04539 from=376 to=452 evalue=3.3e-26 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.30e-26 | tgr:Tgr7_3035 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=451 to=529 evalue=5.6e-25 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.60e-25 | tgr:Tgr7_3035 |
| Sigma70_r2 (db=HMMPfam db_id=PF04542 from=297 to=367 evalue=3.6e-23 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.60e-23 | tgr:Tgr7_3035 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=370 to=444 evalue=1.5e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.50e-21 | tgr:Tgr7_3035 |
| Sigma70_r4 (db=HMMPfam db_id=PF04545 from=465 to=518 evalue=2.2e-20 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.20e-20 | tgr:Tgr7_3035 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=370 to=421 evalue=2.5e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.50e-17 | tgr:Tgr7_3035 |
| Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=11 to=45 evalue=1.1e-15 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.10e-15 | tgr:Tgr7_3035 |
| RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
99.8 | 533.0 | 1035 | 0.0 | K2BA88_9BACT | |
| RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GPV7_THISH | similarity |
UNIREF
DB: UNIREF90 |
66.6 | null | 684 | 1.90e-194 | tgr:Tgr7_3035 |
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