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BSR_inoc_200619_11

Organism: BSR_inoc_Desulfovibrio_65_12

partial RP 39 / 55 MC: 1 BSCG 39 / 51 MC: 1 ASCG 11 / 38 MC: 2
Location: comp(12749..16216)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.7
  • Coverage: 1147.0
  • Bit_score: 1506
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q142_9DELT similarity UNIREF
DB: UNIREF100
  • Identity: 65.7
  • Coverage: 1133.0
  • Bit_score: 1486
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 65.2
  • Coverage: 1145.0
  • Bit_score: 1479
  • Evalue 0.0

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Taxonomy

Desulfovibrio sp. TomC → Desulfovibrio → Desulfovibrionales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3468
TTGCAGTATCCGTCTGAGATTGCGAATTTTCTGAAAGGCCGGGGGAGTTCGCTTGGTGTGTATAAAAGCGGACCCGGCACCCTGGCCTTTCTGGCCGCCGACATGTTGGCCGCAGGCTCTTGCGTGGTGGTCATCGTGCCGGGAGCGCCGGAACTGGCCCGGCTCAAATCCCTTTTTTCCCTGCTGTTGTCCCCGGGGGACGACCCCCTGGTCGATGCCCCCTGGCGGGCCCTGCCGCCCTATCCTCCAGGGGCGCCGTCCCTTTCGGCCTGGGCCGCGCGGCATGCCTTTCTCAATTTCGCGACCGCCACCGCAAAGCCCCGTCTGTGCCTCTTGACCGTGGACAACCTGTTGCCCAAATGGCCGCCCAGGCAGGTGATCGAGGAAAGTTCCATCGAGCTTGCGGCGGGGGAGGACATGTCCCGGGAGCTTCTTTTGGAGCAGGCCGCCCTGTGGGGATACCGCCGCCAGCCCATGGTGGAGTCTCCCGGCGAGGTGGCCGTGCGCGGCGACGTGCTGGACATCTTCGCCCCGGGGTATGCGTTGCCCCTGCGTTTCGAGTTTTTCGGGGACACCATCGAGAACATCCGCACCTTCGACCCCGCCACCCAGCGTTCCCAGGCCGACCTGCCGCGCGTGCAGCTTTTGCCCGTGGCCCCGGTCGTGCTCACCGACGCCTCGCGCGCCGCAGCCCGGGAATTGTGGGAATCCATGGCCGTGACCGGCGAACTGCGCCGTGAGGCCAAGGCATCCCTGGAAAACAAGCTCGACGCCGGGGATGCAACCATCTGGCCTGGTCTTTTTTATGAAAAACCCGCGTCCTTGACCGAGCATCTGCCCCGGGACGCCGTGTACATGCTGTATGACGCCTCGCGCCTGCGCTCCCGCCTGGAGGAGGTGGAATACGCCTGGAAGCAGTTTTTTGAGGCCGAGACCGCACAGCGGGGATTCGGCTGGCCCGGACCTCGGCTGTGCTGGCCCGGGGGCATGGCCCGCAAGATGTGGCTGGCCGGGCGGCAGGTGCTTTTCGAGGATCTGGTGCTGGGGCACGGCAAACACGGCCCGGACATGCCCGAGAAGGGCGTGGAACGGTTCTCCGACCTGTTCTGGAAACCGGGGGAGGACAAGCGCCCGTGGTCGGCGCTCATGTCCGGGCTGCGGGACTGGGCCGTGTCCAAACGGCAGGTGGTGCTGTCGTTTCACGGGGAGCGTTCGCGCACCAAGTTTTTGAAGATGATCGAACACGAGGGCATCTCCCTCTCCACCACGTACCATCCCGGAACGACAGGCCTTTTTGCCATGGTGTCGCCGCTTCGCCAGGGCATGGAGCTGGCCTGGAACCGGACGCTGATCCTGTCCGAGGACGTGCTGCGCCCCGAGGGCGGGGAGGATGCAGGACGGGCCGCACGGGCGCGCGGCTTCAAGGGGATCGCCTCGAAGGATGAGATCGCGCCGGGGGATCTGGTGGTGCATCGCGACTACGGGCTGGCCCGTTTCGACGGATTGGCCCGGATGACCGTGGACAGCGCGGGCGGGGACTACCTTTTGCTGCATTTCGACGGCGAGGACCGCTTGTACGTGCCCGTGGACCGGATGTCGCTGATCCAGAAGTTCAAGGGGCCCGACGGGATCGATCCGGCCCTGGATCGTCTGGGCGGCAACCGCTGGAAGCTCGGCCGGGAAAAGGCCAAAAAGGCCATCGAGATGATCGCCCGGGATCTGGTGGAGATGTACGCCTTTCGCAAGGTCGCCAAGGGTTATGCGTACGGCCCCCTCAACGAGCTGTACTGGGAGTTCGAGGCCGGGTTCGGCTTCGAGGAGACCCCGGACCAGGAAAAGGCCATTGCCGACGTTTTAGCCGACATGGAACGCCCCGAGCCCATGGACCGCCTGGTCTGCGGCGACGTGGGCTTCGGCAAGACCGAGGTGGCCCTGCGCGCCGCCTTTCGGGCCGTGCTCGACGGCAAGCAGGTGGTCATGCTGTGTCCCACCACGGTTTTGGCCGAACAGCATTTTCAGAATTTCAGCAAGCGCCTGGGGGATTTTCCGGTCCGGGTGGGGATGCTGAGCCGGTTTGTGCCGCCCAAACGCCAGAAGGTGGTGACGGATGGGGTCAGGAGGGGGGAAATCGACATCCTGATCGGCACCCACCGCCTGCTGTCGAAAGATGTGGAGGCCCCCCGCCTGGGGCTTCTCATCCTGGACGAGGAGCAGCGTTTCGGGGTCAAGCACAAGGAAAAGCTCAAGGCTCTGCGCAAAAACATCGACGTCCTGACGCTCACGGCCACCCCCATTCCCCGCACCCTGCAACTGTCGCTTTCCGGCATCCGGGGCCTAAGCGTCATCGAGACCCCGCCCCCGGAGCGCAAGGCTGTGGAGACGCTTCTGGTCGAGCGCGACCCGGATTTTCTGCGTACCGTGGTGCGCCGGGAACTGGAGCGCCAGGGGCAGGTGTTTTGGGTGCACAACCGGGTGCGCGGCCTGGAGGAGACGGCGGCCTTCGTCAAACGGCTGGTTCCCGAGGCCCGGGTGGCCATGGCCCACGGCCAGATGGCCGAGGGGGCGCTGGAAAAGGCCATGCACGAATTCTGGCATGGCGAGATCGACATCTTGGTGTGCACGGCCATCATCGAGTCGGGCCTGGATTTTCCCCGGGCCAACACCCTCGTCGTGGACCAGGCCCAGATGTTCGGCCTGGGCCAGCTTTACCAGTTGCGCGGCCGGGTGGGGCGCTCGTCGCTGCAGGCTTATGCCTATTTCGTGGTCCCCTCCCTGGACGGCATTCAGGAGACGGCCCGCAAAAGGCTGCGGATCATCCAGGACATGGACTATCTGGGGGCGGGCTTCCAGGTGGCCATGGAGGACTTGCGGCTGCGCGGCGCGGGAAACATCCTGGGCGAGGTGCAATCCGGCCAGATTTCACGGATCGGGCTGGACATGTTTTTGGAGATGCTCGACGATGAGATCAAGCGGCTGCGCGGCGAGCCGCAAAACGAGCGCACGGATCCGGAATTGACCATCGCCGTGTCGGCCCGCATCCCGGAAGGCTACGTGTCCGACCCCAAGGATCGGTTGCGGCTTTACAAAGCCCTGTCCACAGCACACAATGAGTCGGGTCTGGCCGAGATGGCCGCCGAAATGCGCGACCGGTTCGGGGCCTTGCCCGAGGAGGTGGAGAACTTCATCTCCGTTTTGGCCCTCAAGCAGGTTCTGGCCAGGCTTCAAGTGGCCCGCGCCGATGTGACCGCGTCCAAGCTGTCCCTGTCCTGGGAAACCCGGCCGGGCGCGGTGGGTGCGGTTTCGGCCGAAAGCCTGGTGGCGTTCGTCAATACCCACGGCGACCGGGCGCGGCTCGTGCCCCCGGCGAAACTGGAGATGCGCCTTTCCGAAGGCGGCCTGCGCACCGGGTTGGCCGAGGCGGCCCGGGAACTGGCCGCGCTGTGCGCCACACCTCCGGACGGAAAGTGA
PROTEIN sequence
Length: 1156
LQYPSEIANFLKGRGSSLGVYKSGPGTLAFLAADMLAAGSCVVVIVPGAPELARLKSLFSLLLSPGDDPLVDAPWRALPPYPPGAPSLSAWAARHAFLNFATATAKPRLCLLTVDNLLPKWPPRQVIEESSIELAAGEDMSRELLLEQAALWGYRRQPMVESPGEVAVRGDVLDIFAPGYALPLRFEFFGDTIENIRTFDPATQRSQADLPRVQLLPVAPVVLTDASRAAARELWESMAVTGELRREAKASLENKLDAGDATIWPGLFYEKPASLTEHLPRDAVYMLYDASRLRSRLEEVEYAWKQFFEAETAQRGFGWPGPRLCWPGGMARKMWLAGRQVLFEDLVLGHGKHGPDMPEKGVERFSDLFWKPGEDKRPWSALMSGLRDWAVSKRQVVLSFHGERSRTKFLKMIEHEGISLSTTYHPGTTGLFAMVSPLRQGMELAWNRTLILSEDVLRPEGGEDAGRAARARGFKGIASKDEIAPGDLVVHRDYGLARFDGLARMTVDSAGGDYLLLHFDGEDRLYVPVDRMSLIQKFKGPDGIDPALDRLGGNRWKLGREKAKKAIEMIARDLVEMYAFRKVAKGYAYGPLNELYWEFEAGFGFEETPDQEKAIADVLADMERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVVMLCPTTVLAEQHFQNFSKRLGDFPVRVGMLSRFVPPKRQKVVTDGVRRGEIDILIGTHRLLSKDVEAPRLGLLILDEEQRFGVKHKEKLKALRKNIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPPERKAVETLLVERDPDFLRTVVRRELERQGQVFWVHNRVRGLEETAAFVKRLVPEARVAMAHGQMAEGALEKAMHEFWHGEIDILVCTAIIESGLDFPRANTLVVDQAQMFGLGQLYQLRGRVGRSSLQAYAYFVVPSLDGIQETARKRLRIIQDMDYLGAGFQVAMEDLRLRGAGNILGEVQSGQISRIGLDMFLEMLDDEIKRLRGEPQNERTDPELTIAVSARIPEGYVSDPKDRLRLYKALSTAHNESGLAEMAAEMRDRFGALPEEVENFISVLALKQVLARLQVARADVTASKLSLSWETRPGAVGAVSAESLVAFVNTHGDRARLVPPAKLEMRLSEGGLRTGLAEAARELAALCATPPDGK*