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SCN18_13_7_16_R1_B_scaffold_349_12

Organism: SCN18_13_7_16_R1_B_Burkholderiales_69_20

near complete RP 51 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 12329..15805

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.4
  • Coverage: 1160.0
  • Bit_score: 1931
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNY3_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 83.4
  • Coverage: 1160.0
  • Bit_score: 1931
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 83.7
  • Coverage: 1163.0
  • Bit_score: 1924
  • Evalue 0.0

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Taxonomy

SCN_Comamonadaceae_20x → SCN_Comamonadaceae_20x → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3477
ATGCAACTGCCCAAGCTCATTCCCGGCAAACGCCATGCCCTGCCGCGCCCCCCCGGCTCCAGCGACGCGCTGGCGCTGGCGCGCCTGGCCGAGCGCGAGCGTGCCGCCGGGCGGCTCACCGCCATCGTCACGGCCGACGCCTCGGACGCGCGCCGCCTGCAGGACGAACTGGCCTTCTTTGCGCCCGCGCTGCGCGTCACCCTGTTTCCGGACTGGGAGACCCTGCCCTACGACAGCTTCTCGCCGCACCAGGACCTGATCAGCGAGCGCCTGGCCACGCTGTGGGCCATCCGCCAGCGCCAGGCCGACGTGGTGCTGGTGCCGGCCACCACGGCGCTGTACCGCCTGGCGCCGCCCAGCTTTCTGGCGGCCTACACCTTCGACTTCAAGCAGGGGCAGAAGCTGGACGAGGCGGCGCTCAAGAGCCAACTAACCCTGGCCGGCTACCAGCACGTCACGCAGGTGGTCAGCCCGGGCGAATACGCGGTGCGCGGCGGGCTGATCGACCTGTTTCCGATGGGCTCGCCGCAGCCGTTTCGGGTCGACCTGTTCGACGACGAGATCGACTCGATCCGCGCCTTCGACCCCGACACGCAGCGCAGCCTGTACCCCGTGCCGGCGGTGCGCCTGCTGCCGGGGCGCGAGTTTCCGCTCGACGAGGCGGCGCAGGCGCGCTTTCGCCACCGCTGGCGCGAGCTGCTGGAGGGCGACCCGACCAAGAGCCGCCTCTACAAGGACATGGGCCACGGCGTGGCCTCGGCCGGCATCGAGTACTACCTGCCGCTCTTTTTCGAGCAGACGGCCAGCGTGTTCGATTACCTGGGTGACCAAGCGACACTGGTGCTGCACGGCGACCTGGAGCCGGCCTTCCAGCAGTTCACGCAGGACACGCGCGAGCGCCATCGCCTGGCGCAGGGCGACCCCGAGCGGCCGGTGCTGCCGCCCGAGGCGCTGTTTCTCAGTGCCGAAGACTTTTACCTCGCCGCCAAGCCCCTGCCCCAGCTGGCCTTGCGCCCCGGCGTGGGCGACGTGAATGAAAGTGCCTTTGCGCAAACCCTGCCCGAGCTGACCGCCCAGCGCGGCGCCGACGATCCGCTGCAGCGCCTGCAGGCGCACATTCGCGTCGGCGCCCGGCGCGTGCTGGTGCTGGCCGAAAGCGCGGGCCGGCGCGAGAGTCTGCTGGACTTTCTGCGCGCCAGCGGCCTGAACCCGCCGGCCTTCGATGCGCTGGCCGAGTTCGAGGCCAGCAGCGAGCCGACCGGCATCGCCACCGCCGCGCTGGCCCGAGGCTTTGCGTGGGTCGAAGGCGGCATCGACTTCGTCACCGAGACCGAGCTGTTCGCCGCCGGCCCCACCACGCGCCGGCACAAAAGGCAGGAGCAGGTCAGCGACGTCGAGGCGCTGATCAAGGACCTGTCGGAGCTGAAGGTGGGCGACCCGGTGGTGCACGCGCAGCACGGCATCGGGCGCTACCGCGGCCTGGTCAACCTGGACGTGGGCGCCACCAACCCCGACGGCAGCGCAGCGCCGCAAGAATTCCTGCACCTCGAATACGCGGGTGAGGCGGTGCTGTACGTGCCGGTGTCGCAGTTGCACCTGATCGGCCGCTACACCGGCGTGTCGGCCGACGAGGCGCCGCTGCACAAGCTGGGCAGCGGCCAGTGGGAAAAGGCCAAGCGCAAGGCGGCCGAGCAGGTGCGCGACGCCGCCGCCGAGCTGCTCAACATCCACGCCCGGCGCGCCGCGCGCGAGGGCCACGCGTTTCGCTATTCGCCGCACGACTACGAGCAGTTCGCGGCCGACTTCGGCTTCGAGGAAACGGCCGACCAGAGCGCGGCCATCCACGCCGTCATCCAGGACATGATCAGCCCGCAGCCGATGGACCGGCTGGTGTGCGGCGACGTCGGCTTCGGCAAGACCGAGGTGGCCCTGCGCGCGGCCTTCGTCGCCGTCACCGGCGGCAAGCAGGTGGCCCTGCTGGCGCCCACCACCCTGCTGGCCGAGCAGCACTACCAGACGCTGCAAGACCGCTTTGCCAAGTGGCCGGTGAAGGTGGCGCAGATGAGCCGCTTCGCCTCGGGCAAGGAAACCACCGCCGCGCTCAAGGGCCTGGCCGACGGCAGCGTCGACATCGTGGTCGGCACGCACAAGCTGCTGTCCGAGAAAACGCGCTTCAAGAACCTGGGCCTGCTGATCATCGACGAGGAGCATCGCTTCGGCGTGCGCCACAAGGAGCAGATCAAGGCCCTGCGCGCCGAGGTCGACGTGCTGACGCTCACGGCCACGCCGATCCCGCGCACCATGGGCATGGCGCTGGAGGGGCTGCGCGACCTCAGCGTGATCGCCACCGCGCCGCAGCGGCGCCTGGCCATCAAGACCTTCGTGCGCAGCGAAAGCCACGGCACCATCCGCGAGGCGGTGCTGCGCGAATTGAAGCGCGGCGGGCAGGTCTACTTTCTGCACAACGAGGTCGAGACCATCGAGAACCGCCGCCAGGCGCTGGAAAAAATCCTGCCCGAGGCGCGCATCGCCATCGCCCACGGCCAGATGCCCGAGCGCCAGCTGGAGCACGTGATGCGCGACTTCGTGGCGCAGCGCCACAACCTGCTGCTGTGCTCGACCATCATCGAGACCGGCATCGACGTGCCCACGGCCAACACCATCGTCATCGCGCGCGCCGACAAGTTCGGCCTGGCGCAGCTGCACCAGCTGCGCGGGCGCGTGGGCCGCAGCCATCACCAAGCCTACGCCTACCTGATGGTGCCCGACGTGCAGAGCCTGACCAAGCAGGCCGAACAACGGCTGGAAGCGATCCAGCAGATGGAGGAGCTGGGCAGCGGCTTTTACCTGGCCATGCACGATCTGGAAATCCGCGGCGCCGGCGAGGTGCTGGGCGAGAACCAGAGCGGCAACATGATGGAGATCGGCTTTCAGCTCTACAACGAGATGCTGGCCGAGGCCGTGCGCAGTCTGAAGGCTGGCAAGGAGCCCGACCTGCTGGCGCCCATGCAGGCCGCCACCGACATCAACCTGCACGCGCCCGCCCTGCTGCCCAGCGACTACTGCGGCGACGTGCACCTGCGCCTGTCCTTCTACAAGAAGCTGGCCACCGCCAAGAGCAACGAGCAGATCGACACGCTGGTGGAGGAGATCGTCGACCGCTTCGGCAAGCTGCCGCCGCAGGCGCAAACGCTGATCGACGTGCACCGCCTGCGCGTGGCCAGCCAGCCCTACGGCGTGACCAAGGTGGACGCGGCGCCGGGCGCCATCGCCATCCACTTCAAGCCCAACCCGCCGATCGACCCGATGGCCATCATCCATCTGATCCAGAAGAACCGCGCCATCAAGCTGGCGGGCAACGACAAGCTGCGCATCGAGCGCGCCCTGCCCGAGCCGCGCGAGCGCGCCCAGCTGGTGCGCGACGTGCTGCGCAGCCTGGGGCAGCCGGTGCGCGCGGCCGAGCCGGCGCCGGCCTGA
PROTEIN sequence
Length: 1159
MQLPKLIPGKRHALPRPPGSSDALALARLAERERAAGRLTAIVTADASDARRLQDELAFFAPALRVTLFPDWETLPYDSFSPHQDLISERLATLWAIRQRQADVVLVPATTALYRLAPPSFLAAYTFDFKQGQKLDEAALKSQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSPQPFRVDLFDDEIDSIRAFDPDTQRSLYPVPAVRLLPGREFPLDEAAQARFRHRWRELLEGDPTKSRLYKDMGHGVASAGIEYYLPLFFEQTASVFDYLGDQATLVLHGDLEPAFQQFTQDTRERHRLAQGDPERPVLPPEALFLSAEDFYLAAKPLPQLALRPGVGDVNESAFAQTLPELTAQRGADDPLQRLQAHIRVGARRVLVLAESAGRRESLLDFLRASGLNPPAFDALAEFEASSEPTGIATAALARGFAWVEGGIDFVTETELFAAGPTTRRHKRQEQVSDVEALIKDLSELKVGDPVVHAQHGIGRYRGLVNLDVGATNPDGSAAPQEFLHLEYAGEAVLYVPVSQLHLIGRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIHARRAAREGHAFRYSPHDYEQFAADFGFEETADQSAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPTTLLAEQHYQTLQDRFAKWPVKVAQMSRFASGKETTAALKGLADGSVDIVVGTHKLLSEKTRFKNLGLLIIDEEHRFGVRHKEQIKALRAEVDVLTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRSESHGTIREAVLRELKRGGQVYFLHNEVETIENRRQALEKILPEARIAIAHGQMPERQLEHVMRDFVAQRHNLLLCSTIIETGIDVPTANTIVIARADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDVQSLTKQAEQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNMMEIGFQLYNEMLAEAVRSLKAGKEPDLLAPMQAATDINLHAPALLPSDYCGDVHLRLSFYKKLATAKSNEQIDTLVEEIVDRFGKLPPQAQTLIDVHRLRVASQPYGVTKVDAAPGAIAIHFKPNPPIDPMAIIHLIQKNRAIKLAGNDKLRIERALPEPRERAQLVRDVLRSLGQPVRAAEPAPA*