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SCN18_30_10_14_R3_B_scaffold_1195_1

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(2..157)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.2
  • Coverage: 52.0
  • Bit_score: 104
  • Evalue 4.60e-20
2'-5' RNA ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1K6_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 94.2
  • Coverage: 52.0
  • Bit_score: 104
  • Evalue 3.20e-20
2',5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 88.5
  • Coverage: 52.0
  • Bit_score: 100
  • Evalue 7.80e-20

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Taxonomy

SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 156
ATGCCGCGTCTGTTCACCGGGTTGGAAATTCCCCCCGACATCAGCCAAACGCTGTCGAGCCTGCGTGGCGGCCTGCCCGGCGCGCGCTGGATCGATCCGGAGAATTATCACGTCACCCTGCGCTTCATCGGCGACATCGACGGCTTCGCAGCGGGC
PROTEIN sequence
Length: 52
MPRLFTGLEIPPDISQTLSSLRGGLPGARWIDPENYHVTLRFIGDIDGFAAG