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SCN18_30_10_14_R2_B_scaffold_2480

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2480_1
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

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3..509
DNA (507bp) protein (169aa)
two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C506D
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACM59428.1}; Flags: Precursor;; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
SCN18_30_10_14_R2_B_scaffold_2480_2
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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517..2505
DNA (1989bp) protein (663aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
integral membrane sensor signal transduction histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C506C
histidine kinase
SCN18_30_10_14_R2_B_scaffold_2480_3
unknown

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2682..3545
DNA (864bp) protein (288aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2480_4
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(4071..5594)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3820
Hypothetical conserved protein {ECO:0000313|EMBL:BAL53826.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
organic solvent resistance ABC transporter substrate-binding protein
SCN18_30_10_14_R2_B_scaffold_2480_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(5710..6498)
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B15
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADV62334.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCN18_30_10_14_R2_B_scaffold_2480_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(6500..7351)
DNA (852bp) protein (284aa)
ABC transporter permease n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5224
hypothetical protein
Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AGA25910.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2480_7
unknown

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comp(7483..7818)
DNA (336bp) protein (112aa)
SREBP protease/CBS domain n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5225
SCN18_30_10_14_R2_B_scaffold_2480_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(7827..8321)
DNA (495bp) protein (165aa)
SREBP protease/CBS domain n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5225
Uncharacterized protein {ECO:0000313|EMBL:KKN89015.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase M50
SCN18_30_10_14_R2_B_scaffold_2480_9
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8428..9717)
DNA (1290bp) protein (430aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;"
phosphoribosylamine/glycine ligase (EC:6.3.4.13)
phosphoribosylamine--glycine ligase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C569C
SCN18_30_10_14_R2_B_scaffold_2480_10
SCNpilot_P_inoc_Sphingobacteriales_44_17, SCNpilot_P_inoc_Sphingobacteriales_44_17, SCNpilot_P_inoc_Sphingobacteriales_44_17, SCNpilot_P_inoc_Sphingobacteriales_44_17, Bacteroidetes, Bacteria

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9873..10805
DNA (933bp) protein (311aa)
periplasmic solute binding protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C569D
periplasmic solute binding protein
Periplasmic solute binding protein {ECO:0000313|EMBL:ABQ91433.1}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCN18_30_10_14_R2_B_scaffold_2480_11
SCNPILOT_EXPT_500_P_Chlamydiae_37_5_partial, SCNPILOT_EXPT_500_P_Chlamydiae_37_5_partial, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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10829..11644
DNA (816bp) protein (272aa)
manganese ABC transporter ATP-binding protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C569E
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABU57815.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SCN18_30_10_14_R2_B_scaffold_2480_12
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

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comp(11608..12783)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000378A8CD
Neutral/alkaline non-lysosomal ceramidase
Neutral/alkaline non-lysosomal ceramidase {ECO:0000313|EMBL:AGA27036.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2480_13
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(12986..14149)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003142450
Major facilitator superfamily MFS-1 {ECO:0000313|EMBL:EMI21020.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
sugar phosphate permease
SCN18_30_10_14_R2_B_scaffold_2480_14
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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comp(14149..15066)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F55D4B
Dihydrodipicolinate synthase {ECO:0000313|EMBL:EDL57022.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
dihydrodipicolinate synthetase
SCN18_30_10_14_R2_B_scaffold_2480_15
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15066..16244)
DNA (1179bp) protein (393aa)
galactonate dehydratase (EC:4.2.1.6)
2-oxo-3-deoxygalactonate 6-phosphate aldolase n=1 Tax=Zavarzinella formosa RepID=UPI0002D6F4B1
2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase {ECO:0000313|EMBL:EDM27991.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
SCN18_30_10_14_R2_B_scaffold_2480_16
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(16371..17036)
DNA (666bp) protein (222aa)
possible integral membrane protein of DedA family n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C46A7
hypothetical protein
Tax=RBG_13_Planctomycetes_63_9_curated
SCN18_30_10_14_R2_B_scaffold_2480_17
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17188..17886
DNA (699bp) protein (233aa)
transcriptional regulator, GntR family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4576
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA31427.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2480_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

17919..21149
DNA (3231bp) protein (1077aa)
hypothetical protein n=2 Tax=Gemmata obscuriglobus RepID=UPI00016C4575
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25350.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2480_19
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21221..22687
DNA (1467bp) protein (489aa)
sulfatase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4CCC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25351.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2480_20
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22750..23472
DNA (723bp) protein (241aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase and related enzymes-like protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5884
Uncharacterized protein {ECO:0000313|EMBL:EPX58284.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
endonuclease
SCN18_30_10_14_R2_B_scaffold_2480_21
CN-SCN_Cytophagaceae_12x, CN-SCN_Cytophagaceae_12x, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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23530..25617
DNA (2088bp) protein (696aa)
probable large, multifunctional secreted protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5885
glucose/sorbosone dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Displaying 21 items

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