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SCN18_30_10_14_R2_B_scaffold_2916

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2916_1
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..1474)
-----------------
DNA (1473bp)
protein (491aa)
probable divalent cation resistant determinant protein C n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3545
outer membrane efflux protein
Tax=RBG_16_Planctomycetes_64_12_curated
SCN18_30_10_14_R2_B_scaffold_2916_2
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2178..2780
-----------------
DNA (603bp)
protein (201aa)
SCN18_30_10_14_R2_B_scaffold_2916_3
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2777..5110
-----------------
DNA (2334bp)
protein (778aa)
Spermine/spermidine synthase family protein n=1 Tax=Rhodopirellula europaea SH398 RepID=M5RUU5_9PLAN
Spermine/spermidine synthase family protein {ECO:0000313|EMBL:EMI23075.1}; TaxID=1263868 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2916_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5144..5542
-----------------
DNA (399bp)
protein (133aa)
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI0003718C7D
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU36588.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCN18_30_10_14_R2_B_scaffold_2916_5
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5542..5811
-----------------
DNA (270bp)
protein (90aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTK7_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEH26518.1}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
putative haem peroxidase / cupin, rmlc-type
SCN18_30_10_14_R2_B_scaffold_2916_6
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5808..6026
-----------------
DNA (219bp)
protein (73aa)
Putative uncharacterized protein n=1 Tax=uncultured Acidobacteria bacterium A11 RepID=F8TTK7_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AEH26518.1}; TaxID=1036854 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium A11.;"
anti-ECFsigma factor, ChrR
SCN18_30_10_14_R2_B_scaffold_2916_7
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6284..8578)
-----------------
DNA (2295bp)
protein (765aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003187B6A
PAS domain S-box {ECO:0000313|EMBL:CDM65019.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PAS sensor protein
SCN18_30_10_14_R2_B_scaffold_2916_8
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9092..10255
-----------------
DNA (1164bp)
protein (388aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F35
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25376.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2916_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10597..10728
-----------------
DNA (132bp)
protein (44aa)
SCN18_30_10_14_R2_B_scaffold_2916_10
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10854..11606
-----------------
DNA (753bp)
protein (251aa)
ATP/cobalamin adenosyltransferase n=1 Tax=Schlesneria paludicola RepID=UPI00029A63AA
hypothetical protein
Uncharacterized protein, possibly involved in utilization of glycolate and propanediol {ECO:0000313|EMBL:AGA29712.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2916_11
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11587..13053
-----------------
DNA (1467bp)
protein (489aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
threonine dehydratase biosynthetic n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C8D
threonine ammonia-lyase, biosynthetic, long form
SCN18_30_10_14_R2_B_scaffold_2916_12
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13272..13865
-----------------
DNA (594bp)
protein (198aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F84CD
GCN5-related N-acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCN18_30_10_14_R2_B_scaffold_2916_13
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13928..14302
-----------------
DNA (375bp)
protein (125aa)
Putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4AV42_MARSH
putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase
Putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:EAR00064.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
SCN18_30_10_14_R2_B_scaffold_2916_14
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14352..15167
-----------------
DNA (816bp)
protein (272aa)
SCN18_30_10_14_R2_B_scaffold_2916_15
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15248..16171
-----------------
DNA (924bp)
protein (308aa)
Uncharacterized protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UD19_9CHRO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY92301.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon minutus PCC 6605.;"
SCN18_30_10_14_R2_B_scaffold_2916_16
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16171..17316
-----------------
DNA (1146bp)
protein (382aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL19_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59513.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2916_17
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17341..18408)
-----------------
DNA (1068bp)
protein (356aa)
Uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B2S9_HERA2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX05530.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCN18_30_10_14_R2_B_scaffold_2916_18
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18439..18735)
-----------------
DNA (297bp)
protein (99aa)
Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R0G8_PIRSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB14836.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_2916_19
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18808..19662)
-----------------
DNA (855bp)
protein (285aa)
Radical SAM domain-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL15_9BACT
Radical SAM domain-containing protein {ECO:0000313|EMBL:EEF59509.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
radical SAM domain-containing protein
SCN18_30_10_14_R2_B_scaffold_2916_20
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19659..20981)
-----------------
DNA (1323bp)
protein (441aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
CalE1 n=1 Tax=Micromonospora echinospora RepID=Q8KNJ2_MICEC
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61849.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
SCN18_30_10_14_R2_B_scaffold_2916_21
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20978..21787)
-----------------
DNA (810bp)
protein (270aa)
Conserved uncharacterized protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FH28_STIAD
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO74058.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCN18_30_10_14_R2_B_scaffold_2916_22
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22017..23369)
-----------------
DNA (1353bp)
protein (451aa)
hypothetical protein n=1 Tax=Singulisphaera acidiphila RepID=UPI000373EA85
Neutral/alkaline non-lysosomal ceramidase
Neutral/alkaline non-lysosomal ceramidase {ECO:0000313|EMBL:AGA26758.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2916_23
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23504..24250)
-----------------
DNA (747bp)
protein (249aa)
Methyltransferase type 11 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAB1_SPHTD
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ACZ40754.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCN18_30_10_14_R2_B_scaffold_2916_24
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24361..24522)
-----------------
DNA (162bp)
protein (54aa)
SCN18_30_10_14_R2_B_scaffold_2916_25
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24724..24846
-----------------
DNA (123bp)
protein (41aa)
SCN18_30_10_14_R2_B_scaffold_2916_26
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24886..25857)
-----------------
DNA (972bp)
protein (324aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003143CD2
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA28078.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2916_27
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26099..26533
-----------------
DNA (435bp)
protein (145aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002E9D11B
Uncharacterized protein {ECO:0000313|EMBL:EAQ81810.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_2916_28
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26565..28358
-----------------
DNA (1794bp)
protein (598aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000309150A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29634.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2916_29
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28379..30178
-----------------
DNA (1800bp)
protein (600aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030E606E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29634.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2916_30
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30175..31212
-----------------
DNA (1038bp)
protein (346aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000361DADE
hypothetical protein
Tax=RBG_13_Spirochaetes_68_11_curated
Displaying items 1-30 of 32 in total

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