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SCN18_30_10_14_R2_B_scaffold_2967

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_2967_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(57..713)
DNA (657bp) protein (219aa)
cbbZ; phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902}; Short=PGP {ECO:0000256|HAMAP-Rule:MF_00495};; Short=PGPase {ECO:0000256|HAMAP-Rule:MF_00495};; EC=3.1.3.18 {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
HAD-superfamily hydrolase, subfamily IA, variant 1, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4115
SCN18_30_10_14_R2_B_scaffold_2967_2
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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800..1387
DNA (588bp) protein (196aa)
sigma-24, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F79
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
SCN18_30_10_14_R2_B_scaffold_2967_3
unknown

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1387..1647
DNA (261bp) protein (87aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2967_4

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1786..3144
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3DB3
Marine sediment metagenome DNA, contig: S01H1_S41273 {ECO:0000313|EMBL:GAG51144.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_30_10_14_R2_B_scaffold_2967_5
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(2982..5042)
DNA (2061bp) protein (687aa)
probable thioredoxin n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4A5A
Probable thioredoxin {ECO:0000313|EMBL:EAQ77051.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
redoxin
SCN18_30_10_14_R2_B_scaffold_2967_6
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(5368..5592)
DNA (225bp) protein (75aa)
pseudouridine synthase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C40E0
pseudouridine synthase
Tax=RBG_16_Planctomycetes_64_10_curated
SCN18_30_10_14_R2_B_scaffold_2967_7
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(5601..6131)
DNA (531bp) protein (177aa)
pseudouridine synthase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C40E0
Putative 23S rRNA pseudouridine synthase {ECO:0000313|EMBL:EAQ77322.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
pseudouridine synthase
SCN18_30_10_14_R2_B_scaffold_2967_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(6182..7567)
DNA (1386bp) protein (462aa)
C-terminal processing peptidase S41A n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3944
C-terminal processing peptidase
C-terminal processing peptidase {ECO:0000313|EMBL:AGA29446.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2967_9
scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, Eukaryote

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7907..9097
DNA (1191bp) protein (397aa)
hypothetical protein, partial n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3943
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB17558.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_2967_10
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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9473..10432
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002EF6472
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDL59374.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SCN18_30_10_14_R2_B_scaffold_2967_11
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10471..10914
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D713FD
SCN18_30_10_14_R2_B_scaffold_2967_12
unknown

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comp(11178..11393)
DNA (216bp) protein (72aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2967_13
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

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comp(11589..12359)
DNA (771bp) protein (257aa)
crystallin n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3D7C
ADP-ribosylglycohydrolase family protein
Tax=BJP_IG2158_Actinobacteria_57_21
SCN18_30_10_14_R2_B_scaffold_2967_14

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comp(12527..12958)
DNA (432bp) protein (144aa)
amino acid-binding ACT n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3C9F
Marine sediment metagenome DNA, contig: S01H1_S20771 {ECO:0000313|EMBL:GAG19758.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ACT domain protein
SCN18_30_10_14_R2_B_scaffold_2967_15
SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, SCNPILOT_SOLID_1_TRIM150_Gemmatimonadetes_66_6, Gemmatimonadetes, Bacteria

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13086..15779
DNA (2694bp) protein (898aa)
amidohydrolase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3CA0
amidohydrolase
Amidohydrolase, imidazolonepropionase {ECO:0000313|EMBL:AGA31173.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2967_16
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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16054..16452
DNA (399bp) protein (133aa)
Cytidine deaminase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67S25_SYMTH
cytidine deaminase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SCN18_30_10_14_R2_B_scaffold_2967_17
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(16494..17426)
DNA (933bp) protein (311aa)
glutamyl-tRNA synthetase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4232
glutamyl-or glutaminyl-tRNA synthetase
Glutamyl-or glutaminyl-tRNA synthetase {ECO:0000313|EMBL:AGA25555.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_2967_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(17437..19440)
DNA (2004bp) protein (668aa)
probable serine/threonine protein kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3CC1
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ADB15174.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCN18_30_10_14_R2_B_scaffold_2967_19
unknown

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comp(19551..19736)
DNA (186bp) protein (62aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_2967_20
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

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19850..20875
DNA (1026bp) protein (342aa)
epimerase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C365D
putative L-threonine dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
SCN18_30_10_14_R2_B_scaffold_2967_21
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21070..24588
DNA (3519bp) protein (1173aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F02891
SCN18_30_10_14_R2_B_scaffold_2967_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24656..25435
DNA (780bp) protein (260aa)
short-chain dehydrogenase/reductase SDR n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C2F
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ELZ79460.1}; TaxID=1227460 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax larsenii JCM 13917.;"
short-chain dehydrogenase
SCN18_30_10_14_R2_B_scaffold_2967_23
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(25523..26230)
DNA (708bp) protein (236aa)
Predicted signal transduction protein containing Nacht domain n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C2E
HEAT repeat-containing protein
HEAT repeat-containing protein {ECO:0000313|EMBL:AFZ18368.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
SCN18_30_10_14_R2_B_scaffold_2967_24
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

26528..26731
DNA (204bp) protein (68aa)
glucokinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C2D
Displaying 24 items

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