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SCN18_30_10_14_R5_P_scaffold_242

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Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R5_P_scaffold_242_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..156)
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EGQ7_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_2
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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160..1392
DNA (1233bp) protein (411aa)
Putative uncharacterized protein n=1 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UEX1_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_3
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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1389..2363
DNA (975bp) protein (325aa)
Putative oxidoreductase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZI6_ANATU
putative oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2370..2834)
DNA (465bp) protein (155aa)
tRNA proofreading protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UDU4_9RHOB
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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2948..3787
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035F4987
amidohydrolase 2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_6
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3784..4239
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003606B1D
Aha1 domain-containing protein
Aha1 domain family protein {ECO:0000313|EMBL:ENN87116.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCN18_30_10_14_R5_P_scaffold_242_7
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4229..4897)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031C759C
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGM30358.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
phosphinothricin acetyltransferase
SCN18_30_10_14_R5_P_scaffold_242_8
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5004..5897
DNA (894bp) protein (298aa)
Uroporphyrinogen-III synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEX7_9BRAD
LysR family transcriptional regulator {ECO:0000313|EMBL:ETR77128.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
cmpR; LysR family transcriptional regulator
SCN18_30_10_14_R5_P_scaffold_242_9
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6009..8954
DNA (2946bp) protein (982aa)
Putative protease n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I456_AZOC5
protease
Putative protease {ECO:0000313|EMBL:BAF87690.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_30_10_14_R5_P_scaffold_242_10
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8967..9431)
DNA (465bp) protein (155aa)
thiol peroxidase, Bcp-type (EC:1.11.1.15)
Thiol peroxidase, Bcp-type {ECO:0000313|EMBL:BAQ16121.1}; EC=1.11.1.15 {ECO:0000313|EMBL:BAQ16121.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036851DC
SCN18_30_10_14_R5_P_scaffold_242_11
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9428..12370)
DNA (2943bp) protein (981aa)
glnE; glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FRM8_PHAMO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_12
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12419..15604
DNA (3186bp) protein (1062aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KMP0_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_13
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15631..16884)
DNA (1254bp) protein (418aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Tyrosine--tRNA ligase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9P7_AZOL4
tyrS1; tyrosine tRNA synthetase
SCN18_30_10_14_R5_P_scaffold_242_14
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16969..18093
DNA (1125bp) protein (375aa)
Anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Anhydro-N-acetylmuramic acid kinase n=2 Tax=Magnetospirillum gryphiswaldense MSR-1 RepID=V6EY35_9PROT
SCN18_30_10_14_R5_P_scaffold_242_15
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18090..18764)
DNA (675bp) protein (225aa)
alpha/beta hydrolase n=1 Tax=Novispirillum itersonii RepID=UPI0003656338
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_16
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19002..19478
DNA (477bp) protein (159aa)
Transcriptional repressor of Fe-S cluster biogenesis genes n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z1S6_AZOL4
iscR; transcriptional repressor of Fe-S cluster biogenesis genes
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_17
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19493..20614
DNA (1122bp) protein (374aa)
Cysteine desulfurase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z1S7_AZOL4
iscS2; cysteine desulfurase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_18
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20633..21871
DNA (1239bp) protein (413aa)
Cysteine desulfurase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2U3_MAGSA
cysteine sulfinate desulfinase/cysteine desulfurase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_19
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21928..22335
DNA (408bp) protein (136aa)
NifU homolog involved in Fe-S cluster formation n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U0G9_9PROT
iscU; scaffold protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_20
Candidatus Caedibacter acanthamoebae_SCNPILOT_EXPT_500_P_Alphaproteobacteria_novel_39_47, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22355..22753
DNA (399bp) protein (133aa)
HesB/YadR/YfhF n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U0G8_9PROT
iscA; FeS cluster assembly protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_21
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22763..23275
DNA (513bp) protein (171aa)
Co-chaperone protein HscB homolog n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQI4_PHAMO
putative Iron-sulfur cluster co-chaperone protein HscB
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_22
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23272..25167
DNA (1896bp) protein (632aa)
Chaperone protein HscA homolog n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2U7_MAGSA
hscA; Chaperone protein hscA for IscU
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_23
SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, SCNPILOT_EXPT_1000_BF_Rhodospirillales_43_39, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25195..25521
DNA (327bp) protein (109aa)
2Fe-2S ferredoxin id=2439379 bin=GWA1_Alphaproteobacteria_45_9 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
ferredoxin
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_24
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25536..25742
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M7R0_9PROT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_25
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25825..26403
DNA (579bp) protein (193aa)
Outer membrane lipoprotein n=2 Tax=Haemophilus RepID=E7AHL9_HAEIF
outer membrane lipoprotein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_26
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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26449..26973
DNA (525bp) protein (175aa)
Membrane protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IFP2_9BURK
Outer membrane lipoprotein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_27
Paracoccus sp. 361_CN-SCN_Paracoccus_21x, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27060..28187
DNA (1128bp) protein (376aa)
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=MNMA_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_28
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28187..28549
DNA (363bp) protein (121aa)
Glyoxalase family protein n=1 Tax=Prevotella buccae D17 RepID=D3HXJ8_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_30_10_14_R5_P_scaffold_242_29
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28601..29623
DNA (1023bp) protein (341aa)
Uncharacterized protein UPF0065 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46U79_CUPPJ
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:AAZ63305.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCN18_30_10_14_R5_P_scaffold_242_30
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29661..30932
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIE0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE06228.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
Displaying items 1-30 of 104 in total

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