ggKbase home page

SCN18_25_8_15_R4_B_scaffold_1176_10

Organism: SCN18_25_8_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(6311..7606)

Top 3 Functional Annotations

Value Algorithm Source
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.3
  • Coverage: 429.0
  • Bit_score: 684
  • Evalue 8.80e-194
Serine hydroxymethyltransferase n=2 Tax=Labrenzia RepID=U7FKR4_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 79.3
  • Coverage: 429.0
  • Bit_score: 684
  • Evalue 6.30e-194
glyA; serine hydroxymethyltransferase 1 similarity KEGG
DB: KEGG
  • Identity: 77.9
  • Coverage: 430.0
  • Bit_score: 676
  • Evalue 2.80e-192

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1296
ATGAGTGCCGCAAATACGCAGGATTCCGGGTTTTTCACGCAAGGGTTGGCCAGTGCGGACCCTGAAATTGCTGGCGCCATCCAGGATGAGCTGGTCCGCCAGCAGACCAAGATCGAGCTGATCGCCTCCGAAAACATCGTCTCCAAAGCTGTTCTGGAGGCGCAGGGTTCGATCTTCACCAACAAATATGCCGAGGGCTATCCGGGCAAACGCTACTATGGCGGCTGTGAGTATGCCGATGTGGTGGAGAACCTGGCGATCGAGCGGGCCAAGAAGCTGTTCGGGGCCAATTTCGCCAATGTGCAGGCCAATTCCGGCAGCCAGATGAATCAGGCGGTGTTCCTGGCGCTGCTGAACCCCGGCGACACCTTCATGGGGCTGGATCTGGCCGCGGGCGGGCACCTGACCCACGGCTCCCCGGTCAATATGAGCGGGAAGTGGTTCAAGCCGGTCTCCTATGGCGTCAGGCGGGACGATCATCGCCTCGACATGGACGAGATCGCGAAGCTCGCCCGCGAACACAAGCCCAAGCTGATCGTGGCGGGTGGCACCGCTTATTCGCGGTTCTGGGATTTCAAACGCTTCCGCGAGATTGCCGACGAGGTGGGTGCCTATCTGATGGTGGACATGGCCCACTTCGCCGGGCTGGTTGCGGGCGGGGTGCACCCGAGCCCGGTGCCGTATGCGCATGTCGTAACCTCCACCACCCACAAATCGCTGCGTGGCCCCAGAGGCGGGCTGATCCTGAGCAATGACGAGGCGATGGCGAAGAAGATCAATTCCGCCATTTTCCCCGGCCTGCAGGGTGGGCCCTTGATGCATGTGATTGCGGCCAAAGCGGTGGCGCTGGGTGAGGCGCTCAGGCCCGACTTCAAGATTTACGCGAAGAACGTGGTCGAGAATGCGCGCGCGCTGGCCGAAACGCTGAAGAGCGAGGGGCTCGACATCGTGTCGGGCGGCACCGACAACCATCTGATGCTGGTCGATCTCCGGCCGAAGAAGGCGACCGGCAAGTTCACCGAGAAGGCGCTGGATCGCGCCGCGATCACCTGCAACAAGAACGCCATCCCTTATGATCCTGAAAAACCGTTCGTGACTTCGGGCATCCGGCTCGGCACACCGGCGGCAACCACACGCGGTTTCGGCCCGGCCGAATTCCGCGAGGTCGGCAAGCTGATCGCCGAAGTGGTGAGCACGCTGGAGGGCAAAAATTCCGAAGAGGGCGATCCTGCCGTGGAAGCGAAGGTGCGGGCCCGCGTGACCGAACTCTGCCGCCGTTTTCCGATTTATCAGTAG
PROTEIN sequence
Length: 432
MSAANTQDSGFFTQGLASADPEIAGAIQDELVRQQTKIELIASENIVSKAVLEAQGSIFTNKYAEGYPGKRYYGGCEYADVVENLAIERAKKLFGANFANVQANSGSQMNQAVFLALLNPGDTFMGLDLAAGGHLTHGSPVNMSGKWFKPVSYGVRRDDHRLDMDEIAKLAREHKPKLIVAGGTAYSRFWDFKRFREIADEVGAYLMVDMAHFAGLVAGGVHPSPVPYAHVVTSTTHKSLRGPRGGLILSNDEAMAKKINSAIFPGLQGGPLMHVIAAKAVALGEALRPDFKIYAKNVVENARALAETLKSEGLDIVSGGTDNHLMLVDLRPKKATGKFTEKALDRAAITCNKNAIPYDPEKPFVTSGIRLGTPAATTRGFGPAEFREVGKLIAEVVSTLEGKNSEEGDPAVEAKVRARVTELCRRFPIYQ*