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SCN18_25_8_15_R4_B_scaffold_5793_1

Organism: SCN18_25_8_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: comp(28..693)

Top 3 Functional Annotations

Value Algorithm Source
Components of type IV pilus n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J4Z3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 37.6
  • Coverage: 213.0
  • Bit_score: 133
  • Evalue 2.10e-28
Components of type IV pilus {ECO:0000313|EMBL:EGL66950.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 37.6
  • Coverage: 213.0
  • Bit_score: 133
  • Evalue 3.00e-28
Putative pilus assembly protein cpaD; putative signal peptide similarity KEGG
DB: KEGG
  • Identity: 36.6
  • Coverage: 213.0
  • Bit_score: 127
  • Evalue 2.50e-27

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGAACACGAAACATCTGTTGCGGCTGGGCGCGCTGGCGGCGGTTCTTCTGGCCGGAAGCTGCGCCAACGATCCGGCCACCACGCGCTTCGCCGATGGTGCGGCCAATCATCCGATCACTGTTTCGCCCAGCTACAAAACGCTGAGCCTGCCGTTTGTCGCCGGCAGCGGTTCGTTGAATGGCGAGAACGAGGCGAAGTTCGAGGCCTTCGTGCAGGATTTCCGTTCCCGCGGCAATGGCGCGATTTCGGTTTCGGCGCCGGCCGGCCCGGGCGCGGCCGACACCATCCGCTATTTCGGCGAGAAGCTGGCGAGCCTTGGTGTTGCGCGCACCAGCATCATGGTCGGCACCCATGACATCGCCAATGGCGGCAGCAATGTCACGGTCGGTTACCTCGCCTATACTGCGCGCGCCGGCAATTGCCGGGACTGGTCGGAGGATGCGGCCGACACCTGGACCAATGAGCCGATGCCGGATTTCGGCTGTTCGGTTCAGCACAACATCGCCGCCATGGTTGCCGATCCGCGCGATCTTCTTGGCCCGCGCCCGATGGGGCCGGGTGATGCCACGCGGCGCGCAACGATCATGAACAAGTATGAGAAGGGCGAACCGACGGCTGCGACCAAAACGTCTGATCAGTCCGGCAACGTCTCACAGGTTCAATAA
PROTEIN sequence
Length: 222
MNTKHLLRLGALAAVLLAGSCANDPATTRFADGAANHPITVSPSYKTLSLPFVAGSGSLNGENEAKFEAFVQDFRSRGNGAISVSAPAGPGAADTIRYFGEKLASLGVARTSIMVGTHDIANGGSNVTVGYLAYTARAGNCRDWSEDAADTWTNEPMPDFGCSVQHNIAAMVADPRDLLGPRPMGPGDATRRATIMNKYEKGEPTAATKTSDQSGNVSQVQ*