ggKbase home page

SCN18_25_1_16_R2_B_scaffold_53_18

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47-related_62_30

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: 17733..18221

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RQ70_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 87.0
  • Coverage: 162.0
  • Bit_score: 273
  • Evalue 7.40e-71
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.3
  • Coverage: 162.0
  • Bit_score: 276
  • Evalue 2.10e-71
ECF family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 87.0
  • Coverage: 162.0
  • Bit_score: 273
  • Evalue 2.70e-71

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 489
ATGAGCGCCTTTCGTGACGACGTTGAAAGCATGATCCCGGCCCTGCGGCGTTACGCCCGGGCGCTGACGCGCGATGTCGATATCGCCGACGATCTCGTGCAGGATACGCTGGTGCGCGCACTGCGGTCGGAGCGGTTGTTTCTCGGCGGCGATTTGAGGAGCTGGCTGTATACCATCCTGACCAATCTCAACCGCAACCGCCGCCGCTCGCTGGCACGGCGGCCGCAGTTCGCGCCGTTGCAGGACACCGCCGCCGATGCCAGCGGCACCGAGGCCGAAGGCCGCGACATTGCCCGCGCGCTGGCGACGGTGGTGGAGGATCAACGCTCAGTGCTGCTGCTGGTGATGCTGGAAGGATTGAGCTATCGCGAGGTCGCGGAGATCCAGGGCGTGCCGATCGGCACGGTGATGTCGCGCCTCGCCCGCGCCCGCGCCCACGTCAAGGCCTTCCTCGACGGCGAGCGCCCGGCGCTGCGGCGGGTGAAGTGA
PROTEIN sequence
Length: 163
MSAFRDDVESMIPALRRYARALTRDVDIADDLVQDTLVRALRSERLFLGGDLRSWLYTILTNLNRNRRRSLARRPQFAPLQDTAADASGTEAEGRDIARALATVVEDQRSVLLLVMLEGLSYREVAEIQGVPIGTVMSRLARARAHVKAFLDGERPALRRVK*