ggKbase home page

SCN18_10_11_15_R4_B_scaffold_100_104

Organism: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial_69_13

near complete RP 51 / 55 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: comp(123161..125461)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CF45F7 related cluster n=1 Tax=unknown RepID=UPI0003CF45F7 similarity UNIREF
DB: UNIREF100
  • Identity: 69.2
  • Coverage: 775.0
  • Bit_score: 1101
  • Evalue 0.0
Type IV secretion protein Rhs {ECO:0000313|EMBL:ESW67932.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.0
  • Coverage: 775.0
  • Bit_score: 1099
  • Evalue 0.0
type VI secretion system vgr family protein similarity KEGG
DB: KEGG
  • Identity: 67.1
  • Coverage: 775.0
  • Bit_score: 1070
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial → SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2301
ATGGCAGAGAACCGCGCCGCCATTGCGAGGACACCGGCCGGAGACTCGCTGATCTTCACGCGCCTCGAAGGGCACGACGAGGTCAGCGCCTGCTACGCCTACACGATCTCCTTCGTCAGCAAGGACATCGATATCGACCCGATGTCGATGCTCGGCCAGGCGATCTCGATCGAGGCGGAGGACGAGCCGAAGCGCTGGTTCAGCGGCCAATGCTCGGATTTCAGGCTGACGCGCGTGGAGGAGGGGCTTGCCCGCTACGAGGCGATCGTCCGGCCCTGGCTCTGGTTCCTGGGCAACACCACGGACTGCCGGATCTTCCAGAAGAAGACCGTGGTCGAGATCGTCGAGGCGATCTTCTCCAAATATCCCGAGGCCAAGTTCGAGAAGCGCCTGCAGTCGTCCTATCCGCAGCGGGAATATTGCGTCCAGTACGACGAGAGCGACCTGAGCTTCGTGCAGCGCCTGCTCGAGCACGAAGGCATCATGTACTTCTTCGAGCACGACGACAGCGCGCACACGCTGATCCTCACCGACTCGATGAGCAAGCTGAAGCCGGTGCCCGGCTACGAGATCGTCGAGTTCAATTTCGGCGCGATCGATAACCGGCGCGACAAGGAATACATCACCGAGTGGGCCTATCTGGTGTCGGTCCGTTCCGGCGCCTACGTCCACACCGATTTCGACTTCAAGAAGCCCGCCGCCGACCTGATGTCGCAATCGACGCAACCTTTCGGCCACAAGGAGGCGGGCGGCGAGCAGTATCACCAGCCGGGCGCCCATCTCGACACCGGCCGCGGCGACACGATCGCGGCGATCCGGCGCGAGGAGTTGCAGGCCCCCCACAAGCGCATCGCCGCCGTCGCCAATGCGCGCGGCCTGGCTCCGGGCTGCACCTTCAAGCTCGACGGCTTCCCGCGCGAGGACCAGAACCAGGAATACATGGTGGTGAGCGCCGAATACCGGCTGTTCGACCCCAACTTCGCCGCCGGCATCGACGCCGAGGGCGAGTCCTACACCGTGCTTCTCGGCGTCGCGCCGACCTCGATCACCTACCGCCCGCCGCGCATCACGCCGCGGCCGATCATGCGCGGGCCGCAGACGGCGACGGTCGTCGGACCGTCCGGCCAGGAAATCTTCACCGACGAATATGCGCGCGTGAAGGTGCAGTTCCACTGGGACCGCGAGGGCAAGCGCGACCAGAACAGCTCCTGCTTCGTGCGTGTGTCGCAGACCTGGGCCGGCAGCGGCTGGGGGTTCATCCAGATCCCGCGCATCGGCCAGGAGGTGATCGTCGACTTCGTCGAGGGCGACCCCGACCGGCCGATCATCACCGGCCGCGTCTACAATGCCTCGCAGATGCCGCCCTATTCGCTTCCCGGCAATGCGACGCAGTCGGGCTGGAAGTCCAACTCCTCGCTCGGCGGCGGCGGCTGGAACGAACTGCGCTTCGAGGACAAGGCGGGTTCGGAGGAGGTCTACTTCCAGGCGCAGAAGGACCACACGCTGCTCATCAAGCACGACCGCAAGAAGCACGTGCAGCACGACCAGTCGGACCGGATCGACAACAACGCCAAGCATTCGGTCGGCGTCGACCTCGCCGAGGACGTCGGCCACGACAAGACGCTGAAGGTCGGCCACGACCGGACCGGGACGATCGGCAACAACGACACCGAAACGGTGCTCGGGAACCGCACCCTCACCGTCGCGAAGAACGAGACGATCACCGTCCAGATGAACTCGACCGAGACGATCGGCATCAACCATACCCAGTCGATCGGCGCCGTGCAGAGCATCACCATCGGCGGGGCGCGATCGCTGTCGGTCGCGGCCGGCGAGGTGCTGACGACGGGTGCCTCGCAGGCCGTGACGGTGGGCGCATCCCGGACGGTGACGGTGGGCGGCAGCCAGTCGCATACGGTCGGCGCAAGCGACACGGTCTCGGTCGGGAAGGACCAGACCACCAGCGTCGGCGCGAACCATTCGCTCTCGGTCGGCGGCGCGCGCAATGCCGAGATCGCCAAGGACGACGCGACCGCCATCGGCGGCGCGCACGCCATGAAGGTGGGCAAGGCGAGCGCGACCAATGTCGGCGAGGACGCCAGCCTGACCGTCGGCAAGAACTACGTGCTGGAGGCCAAGGATTCGATCACCCTCAAATGCGGCGACGCCACGATCTCGATGAAGAAGGACGGGACGATCGCCATCAAGGGCAAGGACATCCTGATCACCGCCAGCGGCAAGATCAACGCCAAGGCGAGCGGCGACATCGTCCTGAAAGGGAGCAAGATCCATGACAACTAG
PROTEIN sequence
Length: 767
MAENRAAIARTPAGDSLIFTRLEGHDEVSACYAYTISFVSKDIDIDPMSMLGQAISIEAEDEPKRWFSGQCSDFRLTRVEEGLARYEAIVRPWLWFLGNTTDCRIFQKKTVVEIVEAIFSKYPEAKFEKRLQSSYPQREYCVQYDESDLSFVQRLLEHEGIMYFFEHDDSAHTLILTDSMSKLKPVPGYEIVEFNFGAIDNRRDKEYITEWAYLVSVRSGAYVHTDFDFKKPAADLMSQSTQPFGHKEAGGEQYHQPGAHLDTGRGDTIAAIRREELQAPHKRIAAVANARGLAPGCTFKLDGFPREDQNQEYMVVSAEYRLFDPNFAAGIDAEGESYTVLLGVAPTSITYRPPRITPRPIMRGPQTATVVGPSGQEIFTDEYARVKVQFHWDREGKRDQNSSCFVRVSQTWAGSGWGFIQIPRIGQEVIVDFVEGDPDRPIITGRVYNASQMPPYSLPGNATQSGWKSNSSLGGGGWNELRFEDKAGSEEVYFQAQKDHTLLIKHDRKKHVQHDQSDRIDNNAKHSVGVDLAEDVGHDKTLKVGHDRTGTIGNNDTETVLGNRTLTVAKNETITVQMNSTETIGINHTQSIGAVQSITIGGARSLSVAAGEVLTTGASQAVTVGASRTVTVGGSQSHTVGASDTVSVGKDQTTSVGANHSLSVGGARNAEIAKDDATAIGGAHAMKVGKASATNVGEDASLTVGKNYVLEAKDSITLKCGDATISMKKDGTIAIKGKDILITASGKINAKASGDIVLKGSKIHDN*