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SCN18_14_9_16_R1_B_scaffold_3884_6

Organism: SCN18_14_9_16_R1_B_Rhizobiales_65_9

near complete RP 48 / 55 MC: 1 BSCG 51 / 51 MC: 5 ASCG 13 / 38 MC: 1
Location: comp(5657..6175)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 n=1 Tax=Rhizobium giardinii RepID=UPI0003656CAC similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 172.0
  • Bit_score: 289
  • Evalue 1.80e-75
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EYR82250.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.5
  • Coverage: 172.0
  • Bit_score: 328
  • Evalue 4.90e-87
sige3; RNA polymerase sigma-E factor similarity KEGG
DB: KEGG
  • Identity: 76.2
  • Coverage: 172.0
  • Bit_score: 270
  • Evalue 1.90e-70

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Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 519
ATGCGTCCGACGGCAGAATCAAATGAGTTCCGGCGAGAGTTGGTCAATCTGCTGCCGAAGCTGCGCCGTTTCGCCATGACGCTGACGCGCAACGGCAGCGATGCCGACGACCTCGTGCAGGAGGCATGCGAGAGAGCCATCACGCGAAGCCATCTGTGGAACGGGGAAGGCCGGCTGGAAAGCTGGGTTTATGCCATGACGCGCAATCTCTGGGTGGACGAGATCCGCAAGCGAAAGGTCCGCACGGGCTCCGGCACCGTAGATGTCGCCGAGCAGGACAACCTGCACATCGAGGCATCCGCCGACAAGGCGGTCTATGCCAGGCAGTTGCACAAGTTGATCATGACGATGCCGGAGGGGCTTTCGAGCGTCTTCCTGCTGGTCAATGTCGAGGGGCACAGCTACCGGGTGGCGGCGGATATTCTCGGGATACCGGTCGGCACCGTGATGAGCCGGCTTTCGGCAGCCCGCATCCGGCTCGCCACCATGATCTCCGAACAGGCGGAAAGGAGGGCCTGA
PROTEIN sequence
Length: 173
MRPTAESNEFRRELVNLLPKLRRFAMTLTRNGSDADDLVQEACERAITRSHLWNGEGRLESWVYAMTRNLWVDEIRKRKVRTGSGTVDVAEQDNLHIEASADKAVYARQLHKLIMTMPEGLSSVFLLVNVEGHSYRVAADILGIPVGTVMSRLSAARIRLATMISEQAERRA*