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bjp_ig2599_scaffold_5152

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2599_scaffold_5152_1
CG_Omnitr_02, Omnitrophica, Bacteria

Not on your lists

comp(121..417)
-----------------
DNA (297bp)
protein (99aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036EC155
DNA polymerase beta domain-containing protein Tax=CG_Omnitr_02
nucleotidyltransferase domain-containing protein
bjp_ig2599_scaffold_5152_2

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comp(1289..2059)
-----------------
DNA (771bp)
protein (257aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NBY7_DESAR
Marine sediment metagenome DNA, contig: S01H4_L00580 {ECO:0000313|EMBL:GAG61615.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
4Fe-4S ferredoxin
bjp_ig2599_scaffold_5152_3
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2065..4011)
-----------------
DNA (1947bp)
protein (649aa)
[Fe] hydrogenase, HymB subunit; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RBG_16_Deltaproteobacteria_48_10_curated
hypothetical protein n=3 Tax=unclassified Euryarchaeota (miscellaneous) RepID=UPI00035DD638
hydB; Fe-hydrogenase subunit beta
bjp_ig2599_scaffold_5152_4

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comp(4159..4644)
-----------------
DNA (486bp)
protein (162aa)
bamG3; NADH-quinone oxidoreductase, subunit E (EC:1.6.99.5)
BamG1: predicted NADH-quinone oxidoreductase, subunit E n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NFR4_DESTT
Marine sediment metagenome DNA, contig: S03H2_S00478 {ECO:0000313|EMBL:GAH54093.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
bjp_ig2599_scaffold_5152_5
CG_Elusi_02, Elusimicrobia, Bacteria

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comp(4641..5150)
-----------------
DNA (510bp)
protein (170aa)
4Fe-4S ferredoxin n=1 Tax=Clostridium arbusti RepID=UPI000289BC68
4Fe-4S ferredoxin Tax=CG_Elusi_02
4Fe-4S ferredoxin
bjp_ig2599_scaffold_5152_6
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(5168..7159)
-----------------
DNA (1992bp)
protein (664aa)
cdh2; hypothetical protein (EC:1.2.99.2); K00198 carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.99.2] Tax=CG_Elusi_05
Carbon monoxide dehydrogenase CooS subunit (EC:1.2.99.2)
Carbon-monoxide dehydrogenase catalytic subunit n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SP18_9BACT rbh
bjp_ig2599_scaffold_5152_7
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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comp(7443..8312)
-----------------
DNA (870bp)
protein (290aa)
metF; 5,10-methylene-THF reductase large subunit MetF (EC:1.5.1.20)
metF; 5,10-methylene-THF reductase large subunit MetF Tax=RBG_13_WOR_2_41_10_curated
Methylenetetrahydrofolate reductase id=2263393 bin=GWB2_CP_45_9 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3 rbh
bjp_ig2599_scaffold_5152_8
unknown

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comp(8513..9196)
-----------------
DNA (684bp)
protein (228aa)

This feature has no annotations

bjp_ig2599_scaffold_5152_9
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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comp(9511..10380)
-----------------
DNA (870bp)
protein (290aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RBG_13_WOR_2_41_10_curat
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5)
Methylenetetrahydrofolate dehydrogenase (NADP(+))/cyclohydrolase FolD id=2263394 bin=GWB2_CP_45_9 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3 rbh
bjp_ig2599_scaffold_5152_10
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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comp(10358..10918)
-----------------
DNA (561bp)
protein (187aa)
formiminotransferase-cyclodeaminase Tax=RBG_13_WOR_2_41_10_curated
FchA id=3874757 bin=GWF2_OP3_43_52 species=Clostridium kluyveri genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
fchA; methenyltetrahydrofolate cyclohydrolase
bjp_ig2599_scaffold_5152_11
R_WOR_2_41_12, WOR-2, Bacteria

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comp(11084..12778)
-----------------
DNA (1695bp)
protein (565aa)
Formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
Formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase id=3923517 bin=GWC2_OP3_44_8 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52 rbh
bjp_ig2599_scaffold_5152_12
R_WOR_2_41_12, WOR-2, Bacteria

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comp(13037..13417)
-----------------
DNA (381bp)
protein (127aa)
UPF0102 protein N47_E48140 n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YJ48_9DELT
hypothetical protein; K07460 putative endonuclease Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
hypothetical protein
bjp_ig2599_scaffold_5152_13
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

comp(13410..14012)
-----------------
DNA (603bp)
protein (201aa)
ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII id=3681918 bin=GWF2_OP3_43_52 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig2599_scaffold_5152_14
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists


comp(14113..14460)
-----------------
DNA (348bp)
protein (116aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RBG_13_WOR_2_41_10_curated
50S ribosomal protein L19 id=3681860 bin=GWF2_OP3_43_52 species=[Clostridium] difficile genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rplS; 50S ribosomal protein L19
bjp_ig2599_scaffold_5152_15
R_WOR_2_41_12, WOR-2, Bacteria

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comp(14623..15333)
-----------------
DNA (711bp)
protein (237aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
tRNA (guanine-N(1)-)-methyltransferase id=3681856 bin=GWF2_OP3_43_52 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
trmD; tRNA (guanine-N(1)-)-methyltransferase
bjp_ig2599_scaffold_5152_16
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

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comp(15804..16769)
-----------------
DNA (966bp)
protein (322aa)
queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RBG_13_WOR-2_44_8b_curated
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=3681853 bin=GWF2_OP3_43_52 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig2599_scaffold_5152_17
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

Not on your lists

17027..18067
-----------------
DNA (1041bp)
protein (347aa)
Polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RBG_13_WOR_2_41_10_curated
geranylgeranyl pyrophosphate synthase (EC:2.5.1.1)
Geranylgeranyl pyrophosphate synthase id=4840883 bin=GWC2_OP3-like_45_7 species=uncultured euryarchaeote Alv-FOS1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
bjp_ig2599_scaffold_5152_18
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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comp(18100..19164)
-----------------
DNA (1065bp)
protein (355aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RBG_13_WOR_2_41_10_curated
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QR80_PERMH
bjp_ig2599_scaffold_5152_19
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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comp(19169..19384)
-----------------
DNA (216bp)
protein (72aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39XM9_GEOMG
hypothetical protein Tax=RBG_13_WOR_2_41_10_curated
hypothetical protein
bjp_ig2599_scaffold_5152_20
RLO_RIF03_38_15, RIF3, Bacteria

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comp(19394..19675)
-----------------
DNA (282bp)
protein (94aa)
id=2880749 Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
id=2880749 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
bjp_ig2599_scaffold_5152_21
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

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comp(19672..19935)
-----------------
DNA (264bp)
protein (88aa)
id=2880748 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
id=2880748 Tax=GWF2_WOR_2_43_52_curated
bjp_ig2599_scaffold_5152_22
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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20257..21846
-----------------
DNA (1590bp)
protein (530aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; H
DNA methylase N-4/N-6 domain protein n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YFD4_HALP7
DNA methylase N-4/N-6 domain-containing protein
bjp_ig2599_scaffold_5152_23

Not on your lists

comp(21838..22692)
-----------------
DNA (855bp)
protein (285aa)
hypothetical protein n=1 Tax=Geminocystis herdmanii RepID=UPI0003469036
HindIII restriction endonuclease {ECO:0000313|EMBL:KKT47390.1}; TaxID=1618929 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_44_17.;"
HindIII restriction endonuclease
Displaying 23 items

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