ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_144631_2

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 607..2085

Top 3 Functional Annotations

Value Algorithm Source
multidrug transporter n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000365B3ED similarity UNIREF
DB: UNIREF100
  • Identity: 75.8
  • Coverage: 492.0
  • Bit_score: 713
  • Evalue 1.40e-202
Outer membrane component of multidrug efflux pump {ECO:0000313|EMBL:GAO53256.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.9
  • Coverage: 492.0
  • Bit_score: 894
  • Evalue 3.80e-257
outer membrane efflux protein similarity KEGG
DB: KEGG
  • Identity: 68.5
  • Coverage: 466.0
  • Bit_score: 622
  • Evalue 7.30e-176

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1479
ATGATGCGCCGGTTCCTTGCGATCAATGCGCTGCTTCTCGCCGCCATGGCCGGCACGGCGGCCAGCGCATCCGACCACGTCGCTGTCCGACCGGTGCCCACGACGGCTATGCCCGCCCGCGGAGACGATCAGCCCTCGACGCCGCTGATGCTGGACGAGGTCCTGCGCTCCTCGGCGCGCGCGGCGCCCGACATCGTTGCGGCGCTGGCGCGCGTGCGGCAGGCCGAGGGGCGGGCACTGAGCGCCGAAGGCGCGTTCGACACGGTCTTCTCGGTCGATGCCCGCAGCCGCGTTGCCGGCTATTACGACGGTTCGGAAATCACCGGCAAGGCGGAGCGCCCCCTCACCGGCAACGGCGGATACCTCTACGGCCAGTACCGCAATTCGCGTGGCGATTTCCCGATCTATGAGGACAAGGCCTACACCAACCGGCTTGGCGAGGTGAAGATCGGTGCGCTCTACACCCTGCTGCGGGATCGCATGATCGACGCCCGGCGTTCGACTACGCAGCTCGCCGGGAACGACATCGACATCGCCCGCTTCGAGACGCGCGCCACCGCCATCGGCGTGCAAGCCCGCGCGATCGAGGCCTACCAGAAGTGGGTGGAAAGCGGTCTGAAGCTGCAGGCTTACCAGGCGCTTTACGACATCGCGGTCGAGCGCGGCAAGGGCATCCGCCGGCAGGTGCAACTGGGCGCGAAGCCGGAAATCCTGCTCACCGAGAACGAAGCCAACATGGTCAAGCGGGAAGCCCTGGTCGCGCAGGCACGGCAGGAATTCCGGGCAGCGGCGAACAAGCTCTCGCTTTACTACCGCGATGCAGCGGGGCTTCCGGTCCTGGTCGATGCCGACCGGCTGCCGCCTTCGGCCGCGGCCTTTGACGGCATGAACGTGGACCCTTTCTTCGAAATCGAGGAACGGCCCGATTTCGGCATACTGCTCGAAGAGATCGAGCAGGCATCGGTCAAGCTGGCTCTGGCCGAGAACGACCTGCGGCCCCGGCTCGATCTCAAGGGGGAAATCGCCAAGGACATCGGGCCGGCAGGTGCGGGCGGCTACAGCCGCTCGCCGCTGGAAGTCATCTTCGGCGTGTCGCTCACGGTGCCGCTGCAGAACCGCAAGGCACGGGGCAAGCTGAGCGAAAGCCGCGCCAAGCTCGACGAACTGTCGGTCAAGCAGCGATACCTGGCCGAGAAGATCCGCGCCGAAGTGGCCGGGATCGGCATCGAGGTCGATACCGCGCGCGAACTGGCGGACGCCACCCGCCGGCAGGTCGCTCTCGCCGATCGGCTCGCCGAGGCCGAACGCCGCCGCTTCGCCTTGGGATCGAGTGATTTCTTTCTCGTCAACAGCCGCGAGGAAGCCGCAACCGACGCCGCCGTGAAGCTAATCGAAGCCCGTGCCCGCATCGCCGCCGCGCGGGCGCAGCTCGCTGCGGCGACGGCCGATGAAAGCGCCCTCAAGCTGGACGCGCGTTAG
PROTEIN sequence
Length: 493
MMRRFLAINALLLAAMAGTAASASDHVAVRPVPTTAMPARGDDQPSTPLMLDEVLRSSARAAPDIVAALARVRQAEGRALSAEGAFDTVFSVDARSRVAGYYDGSEITGKAERPLTGNGGYLYGQYRNSRGDFPIYEDKAYTNRLGEVKIGALYTLLRDRMIDARRSTTQLAGNDIDIARFETRATAIGVQARAIEAYQKWVESGLKLQAYQALYDIAVERGKGIRRQVQLGAKPEILLTENEANMVKREALVAQARQEFRAAANKLSLYYRDAAGLPVLVDADRLPPSAAAFDGMNVDPFFEIEERPDFGILLEEIEQASVKLALAENDLRPRLDLKGEIAKDIGPAGAGGYSRSPLEVIFGVSLTVPLQNRKARGKLSESRAKLDELSVKQRYLAEKIRAEVAGIGIEVDTARELADATRRQVALADRLAEAERRRFALGSSDFFLVNSREEAATDAAVKLIEARARIAAARAQLAAATADESALKLDAR*