ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_198070_14

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 11257..11745

Top 3 Functional Annotations

Value Algorithm Source
Type IV prepilin peptidase, cpaA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDF8_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 154.0
  • Bit_score: 228
  • Evalue 2.70e-57
Type IV prepilin peptidase tadV/cpaA {ECO:0000313|EMBL:GAO55153.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 162.0
  • Bit_score: 319
  • Evalue 1.60e-84
peptidase A24A, prepilin type IV similarity KEGG
DB: KEGG
  • Identity: 64.8
  • Coverage: 162.0
  • Bit_score: 210
  • Evalue 2.80e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 489
ATGCAGGGCAATTTCATCGTTTACGGACTGGTCGGAGCCTTGGCAATCGCGCTGCTGGTTGCCGCTTTTACCGATATCCGTCGCCGCCAGATCGACAACTGGCTGAACGCCGCCATCGCGCTGGCCGCGCCCGCGTTCTGGTTCGCGATGGGCTGGCATGTCTGGCCGGATATCGCCGTTCAGATCGGCGTGGCGCTGTTAACCTTCGCCATCCTCGCCGGCCTGTTCGCATTGCGGGTCATGGGCGGCGGCGACGTCAAGCTGCTCGCCGCGCTGGCGCTCTGGATACCGGGCAAGCTGTTTCTGCAATTGCTGGTCATCATGGCGCTGACAGGCGGAATCCTGACGGTCGTGCTCGGCTGCTGGCACGTGATGCGGCGGCAGAAGGACAAGCTGAAAATCCCCTACGGCGTGGCGATCGCGGCCGGCGGACTGTGGATCATCGGCACTACCAACTGGGCCGCTTTGCAAGCCGTTTCGGCAGGATAG
PROTEIN sequence
Length: 163
MQGNFIVYGLVGALAIALLVAAFTDIRRRQIDNWLNAAIALAAPAFWFAMGWHVWPDIAVQIGVALLTFAILAGLFALRVMGGGDVKLLAALALWIPGKLFLQLLVIMALTGGILTVVLGCWHVMRRQKDKLKIPYGVAIAAGGLWIIGTTNWAALQAVSAG*