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RTP_02272018_0_2um_scaffold_409

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_409_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16..1911
DNA (1896bp) protein (632aa)
Chaperone protein HtpG n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=HTPG_THIDA
heat shock protein 90
Chaperone protein HtpG {ECO:0000255|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000255|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000255|HAMAP-Rule:MF_00505}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_409_2
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2051..2350
DNA (300bp) protein (100aa)
Addiction module killer protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZIE9_THASP
addiction module killer protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
RTP_02272018_0_2um_scaffold_409_3
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2354..2641
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMT3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_02272018_0_2um_scaffold_409_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2638..2859
DNA (222bp) protein (74aa)
Transcriptional regulator, XRE family n=1 Tax=mine drainage metagenome RepID=T0ZP12_9ZZZZ
XRE family transcriptional regulator {ECO:0000313|EMBL:GAO34638.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
helix-turn-helix domain-containing protein
RTP_02272018_0_2um_scaffold_409_5
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2951..3136
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00038041AD
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
RTP_02272018_0_2um_scaffold_409_6
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3276..3434
DNA (159bp) protein (53aa)
Plasmid stabilization system n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3J173_9GAMM
plasmid stabilization system
Tax=BJP_08E140C01_Xanthomonadales_64_42
RTP_02272018_0_2um_scaffold_409_7
Acetobacter pasteurianus, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3625..4680
DNA (1056bp) protein (352aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=481145 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pasteurianus subsp. pasteurianus.;"
Cytosine-specific methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WH82_9GAMM
DNA-cytosine methyltransferase
RTP_02272018_0_2um_scaffold_409_8
Acetobacter pasteurianus, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4677..5735
DNA (1059bp) protein (353aa)
ApaI n=1 Tax=Acetobacter pasteurianus subsp. pasteurianus RepID=E3VXA1_ACEPA
ApaI {ECO:0000313|EMBL:ADO24182.1}; TaxID=481145 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pasteurianus subsp. pasteurianus.;"
RTP_02272018_0_2um_scaffold_409_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5797..6570
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Thioalkalivibrio versutus RepID=UPI000375DC5E
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_409_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6661..7065
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000366BAA3
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_409_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7069..7914
DNA (846bp) protein (282aa)
23S rRNA m(1)G-745 methyltransferase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47B73_DECAR
rRNA (guanine-N1-)-methyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_409_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7918..8421
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E4AD6
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_409_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8467..9117
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369FF7B
S-adenosylmethionine-dependent methyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_409_14
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9258..9743
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI000380ABDB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_02272018_0_2um_scaffold_409_15
Moraxella catarrhalis, Moraxella, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10130..10369)
DNA (240bp) protein (80aa)
Uncharacterized protein n=11 Tax=Moraxella catarrhalis RepID=D5V9E2_MORCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIK00420.1}; TaxID=480 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Moraxella.;" source="Moraxella catarrhalis.;"
RTP_02272018_0_2um_scaffold_409_16
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10409..11434)
DNA (1026bp) protein (342aa)
ApbE-like lipoprotein n=1 Tax=Moraxella macacae 0408225 RepID=L2F8D3_9GAMM
Thiamin biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:KGE03362.1}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 19751.;"
apbE; thiamine biosynthesis lipoprotein
RTP_02272018_0_2um_scaffold_409_17
Psychrobacter sp. JCM 18903, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11475..12707)
DNA (1233bp) protein (411aa)
Na(+)-translocating NADH-quinone reductase subunit F {ECO:0000256|HAMAP-Rule:MF_00430}; Short=Na(+)-NQR subunit F {ECO:0000256|HAMAP-Rule:MF_00430};; Short=Na(+)-translocating NQR subunit F {ECO:0000256|HAMAP-Rule:MF_00430};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00430};; NQR complex subunit F {ECO:0000256|HAMAP-Rule:MF_00430}; NQR-1 subunit F {ECO:0000256|HAMAP-Rule:MF_00430}; TaxID=1298610 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. JCM 18903.;"
Na(+)-translocating NADH-quinone reductase subunit F n=1 Tax=Psychrobacter aquaticus CMS 56 RepID=U4TDE3_9GAMM
Na(+)-translocating NADH-quinone reductase subunit F
RTP_02272018_0_2um_scaffold_409_18
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12759..13367)
DNA (609bp) protein (203aa)
Na(+)-translocating NADH-quinone reductase subunit E {ECO:0000256|HAMAP-Rule:MF_00429, ECO:0000256|SAAS:SAAS00170325}; Short=Na(+)-NQR subunit E {ECO:0000256|HAMAP-Rule:MF_00429};; Short=Na(+)-translocating NQR subunit E {ECO:0000256|HAMAP-Rule:MF_00429};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00429, ECO:0000256|SAAS:SAAS00179335};; NQR complex subunit E {ECO:0000256|HAMAP-Rule:MF_00429}; NQR-1 subunit E {ECO:0000256|HAMAP-Rule:MF_00429}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
Na(+)-translocating NADH-quinone reductase subunit E n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=NQRE_PSEMY
Na(+)-translocating NADH-quinone reductase subunit E
RTP_02272018_0_2um_scaffold_409_19
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13367..14035)
DNA (669bp) protein (223aa)
Na(+)-translocating NADH-quinone reductase subunit D {ECO:0000256|HAMAP-Rule:MF_00428, ECO:0000256|SAAS:SAAS00170009}; Short=Na(+)-NQR subunit D {ECO:0000256|HAMAP-Rule:MF_00428};; Short=Na(+)-translocating NQR subunit D {ECO:0000256|HAMAP-Rule:MF_00428};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00428, ECO:0000256|SAAS:SAAS00179330};; NQR complex subunit D {ECO:0000256|HAMAP-Rule:MF_00428}; NQR-1 subunit D {ECO:0000256|HAMAP-Rule:MF_00428}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4BHM7_9GAMM
Na(+)-translocating NADH-quinone reductase subunit D
RTP_02272018_0_2um_scaffold_409_20
Psychrobacter sp. PRwf-1, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14038..14820)
DNA (783bp) protein (261aa)
Na(+)-translocating NADH-quinone reductase subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; Short=Na(+)-NQR subunit C {ECO:0000256|HAMAP-Rule:MF_00427};; Short=Na(+)-translocating NQR subunit C {ECO:0000256|HAMAP-Rule:MF_00427};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00427};; NQR complex subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; NQR-1 subunit C {ECO:0000256|HAMAP-Rule:MF_00427}; Flags: Precursor;; TaxID=349106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. (strain PRwf-1).;"
NADH:ubiquinone oxidoreductase, subunit C n=1 Tax=Psychrobacter sp. (strain PRwf-1) RepID=A5WBL7_PSYWF
Na(+)-translocating NADH-quinone reductase subunit C
RTP_02272018_0_2um_scaffold_409_21
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14813..16030)
DNA (1218bp) protein (406aa)
Na(+)-translocating NADH-quinone reductase subunit B {ECO:0000256|HAMAP-Rule:MF_00426}; Short=Na(+)-NQR subunit B {ECO:0000256|HAMAP-Rule:MF_00426};; Short=Na(+)-translocating NQR subunit B {ECO:0000256|HAMAP-Rule:MF_00426};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00426};; NQR complex subunit B {ECO:0000256|HAMAP-Rule:MF_00426}; NQR-1 subunit B {ECO:0000256|HAMAP-Rule:MF_00426}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
nqrB; Na(+)-translocating NADH-quinone reductase subunit B (EC:1.6.5.-)
Na(+)-translocating NADH-quinone reductase subunit B n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AHU1_PSERE
RTP_02272018_0_2um_scaffold_409_22
Pseudomonas sp. Chol1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16033..17385)
DNA (1353bp) protein (451aa)
Na(+)-translocating NADH-quinone reductase subunit A {ECO:0000256|HAMAP-Rule:MF_00425, ECO:0000256|SAAS:SAAS00017509}; Short=Na(+)-NQR subunit A {ECO:0000256|HAMAP-Rule:MF_00425};; Short=Na(+)-translocating NQR subunit A {ECO:0000256|HAMAP-Rule:MF_00425};; EC=1.6.5.8 {ECO:0000256|HAMAP-Rule:MF_00425, ECO:0000256|SAAS:SAAS00179150};; NQR complex subunit A {ECO:0000256|HAMAP-Rule:MF_00425}; NQR-1 subunit A {ECO:0000256|HAMAP-Rule:MF_00425}; TaxID=440512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Chol1.;"
Na(+)-translocating NADH-quinone reductase subunit A n=1 Tax=Pseudomonas sp. Chol1 RepID=K5X930_9PSED
nqrA; Na(+)-translocating NADH-quinone reductase subunit A
RTP_02272018_0_2um_scaffold_409_23
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17725..18099
DNA (375bp) protein (125aa)
transposase IS110 n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034823FF
Uncharacterized protein {ECO:0000313|EMBL:KFB66115.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
transposase IS116/IS110/IS902 family protein
RTP_02272018_0_2um_scaffold_409_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18080..19558)
DNA (1479bp) protein (493aa)
Ppx/GppA phosphatase (EC:3.6.1.11)
Xopolyphosphatase id=1320596 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_409_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19555..20793)
DNA (1239bp) protein (413aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361BC2F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_409_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20800..21717)
DNA (918bp) protein (306aa)
CobD/CbiB family protein (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJZ9_THIDA
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_409_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21717..22244)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7778
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_409_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22478..23440
DNA (963bp) protein (321aa)
beta-lactamase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BABC1
beta lactamase
Beta lactamase {ECO:0000313|EMBL:AAZ96994.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_409_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23576..25180
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC9CB
response regulator receiver modulated diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_409_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25194..25943)
DNA (750bp) protein (250aa)
permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000376458D
hypothetical protein
Uncharacterized conserved membrane protein {ECO:0000313|EMBL:AAZ96991.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 48 in total

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