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SR-2_scaffold_141_3005262

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Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-2_scaffold_141_3005262_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

208..894
DNA (687bp) protein (229aa)
isoprenylcysteine carboxyl methyltransferase (EC:2.1.1.100)
Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QEC5_METSZ id=5225691 bin=16ft_combo_ws3_JS1 species=unknown genus=Methylocystis taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

979..1740
DNA (762bp) protein (254aa)
ogt; methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LHD7_FRASN id=5225692 bin=16ft_combo_ws3_JS1 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1782..2768
DNA (987bp) protein (329aa)
alias=16ft_combo_ws3_scaffold_2095_23 id=24427562 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2963..3901
DNA (939bp) protein (313aa)
alias=16ft_combo_ws3_scaffold_2095_23 id=24427562 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3933..4934)
DNA (1002bp) protein (334aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3R9_DESAT id=5224435 bin=16ft_combo_ws3_JS1 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4927..6147)
DNA (1221bp) protein (407aa)
Permeases of the major facilitator superfamily n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8R9S3_THETN id=5224434 bin=16ft_combo_ws3_JS1 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
major facilitator superfamily permease
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6256..7650)
DNA (1395bp) protein (465aa)
peptidase, m16 (pitrilysin) family (EC:3.4.24.-)
Peptidase, M16 (Pitrilysin) family n=2 Tax=Myxococcus RepID=Q1D624_MYXXD id=5224433 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7647..9017)
DNA (1371bp) protein (457aa)
pqqL3; M16 family peptidase id=24427566 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
M16 family peptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_9
unknown

Not on your lists

9256..10080
DNA (825bp) protein (275aa)

This feature has no annotations

SR-2_scaffold_141_3005262_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10067..11056
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5A8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37418.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
SR-2_scaffold_141_3005262_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11053..11784
DNA (732bp) protein (244aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5A9_GEMAT
putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAH37419.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
SR-2_scaffold_141_3005262_12
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11781..12905
DNA (1125bp) protein (375aa)
ABC transporter; K09686 antibiotic transport system permease protein id=24572564 bin=RBG_19FT_COMBO_GAL15_69_19 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
ybhS; inner membrane transport permease YbhS
SR-2_scaffold_141_3005262_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12902..14179
DNA (1278bp) protein (426aa)
hypothetical protein id=24463467 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NnrS family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14201..14890)
DNA (690bp) protein (230aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLG7_9BACT id=5225740 bin=16ft_combo_ws3_JS1 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phoU; phosphate transport system regulatory protein PhoU
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14902..15753)
DNA (852bp) protein (284aa)
Phosphate ABC transporter, ATPase subunit n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7E0_ANADF id=5225739 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphate transporter ATP-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_16
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(15755..16702)
DNA (948bp) protein (316aa)
Phosphate ABC transporter, inner membrane subunit PstA n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J9S5_ANAD2
phosphate ABC transporter permease
Tax=RBG_16_Zixibacteria_50_21_curated
SR-2_scaffold_141_3005262_17
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16699..17649)
DNA (951bp) protein (317aa)
Phosphate transport system permease protein PstC n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P6M1_9DELT
Putative ABC transporter permease protein YqgH {ECO:0000313|EMBL:GAO04188.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
phosphate ABC transporter permease
SR-2_scaffold_141_3005262_18
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(17658..18494)
DNA (837bp) protein (279aa)
Phosphate binding protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JAG6_ANAD2
phosphate binding protein
Tax=RBG_16_Zixibacteria_50_21_curated
SR-2_scaffold_141_3005262_19
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(18504..19769)
DNA (1266bp) protein (422aa)
phosphate-selective porin o and p family protein id=7201555 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
phosphate-selective porin o and p family protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
SR-2_scaffold_141_3005262_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19799..20071)
DNA (273bp) protein (91aa)
id=5224430 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20235..21980)
DNA (1746bp) protein (582aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIL2_DESB2 id=5224613 bin=16ft_combo_ws3_JS1 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phoR-2; HAMP/PAS domain-containing phosphate sensor histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21991..22683)
DNA (693bp) protein (231aa)
OmpR; response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP id=24520742 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22802..23680
DNA (879bp) protein (293aa)
hypothetical protein; K06976 id=24427570 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_24
unknown

Not on your lists

comp(23685..24575)
DNA (891bp) protein (297aa)

This feature has no annotations

SR-2_scaffold_141_3005262_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

24708..25346
DNA (639bp) protein (213aa)
alias=16ft_combo_ws3_scaffold_2095_13 id=24427571 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25831..27240
DNA (1410bp) protein (470aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RA69_AMMDK id=5224425 bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dnaA; chromosomal replication initiator protein DnaA
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

27601..28752
DNA (1152bp) protein (384aa)
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=24427573 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DNA polymerase III, beta subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28749..29054
DNA (306bp) protein (102aa)
hypothetical protein id=24427574 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Actinosynnema mirum genus=Actinosynnema taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

29051..30997
DNA (1947bp) protein (649aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] id=24427575 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
Tax=RBG_16_RIF_WS3X_71_46_curated
SR-2_scaffold_141_3005262_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

30997..31611
DNA (615bp) protein (205aa)
alias=16ft_combo_ws3_scaffold_2095_7 id=24427576 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 88 in total

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