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cn_combo_scaffold_1596

Alias: CYT12_25

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1596_1
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2..745
-----------------
DNA (744bp)
protein (248aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagacea
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EDK9_RUNSL
integral membrane sensor signal transduction histidine kinase
cn_combo_scaffold_1596_2
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(823..1389)
-----------------
DNA (567bp)
protein (189aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0NYI6_WEEVC
phospholipid/glycerol acyltransferase
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ADX67106.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella
cn_combo_scaffold_1596_3
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1423..2565)
-----------------
DNA (1143bp)
protein (381aa)
Beta-lactamase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XY17_PEDHD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ACU04435.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (stra
cn_combo_scaffold_1596_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2635..3138
-----------------
DNA (504bp)
protein (168aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W5K6_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94224.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1596_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3227..4693
-----------------
DNA (1467bp)
protein (489aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit
NADH-quinone oxidoreductase subunit N n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VSV9_DYAFD
proton-translocating NADH-quinone oxidoreductase subunit N
cn_combo_scaffold_1596_6
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(4696..5415)
-----------------
DNA (720bp)
protein (240aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EPT3_EMTOG
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFK01686.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotroph
cn_combo_scaffold_1596_7
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5559..6617
-----------------
DNA (1059bp)
protein (353aa)
2Fe-2S iron-sulfur cluster binding domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VQ59_9SPHI
Phenylacetate-CoA oxygenase/reductase {ECO:0000313|EMBL:CDS91845.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" sourc
phenylacetic acid degradation protein
cn_combo_scaffold_1596_8
Bacteroides salyersiae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6685..8460)
-----------------
DNA (1776bp)
protein (592aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8Z5J9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY70725.1}; TaxID=997887 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides salyersiae CL02T12C
spore coat protein CotH
cn_combo_scaffold_1596_9
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8690..9463
-----------------
DNA (774bp)
protein (258aa)
S1/P1 nuclease n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3D0_SPHS2
S1/P1 nuclease rbh
S1/P1 nuclease {ECO:0000313|EMBL:ADZ78108.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="S
cn_combo_scaffold_1596_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9652..11292
-----------------
DNA (1641bp)
protein (547aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia;
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003741006
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
cn_combo_scaffold_1596_11
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11525..11845
-----------------
DNA (321bp)
protein (107aa)
Regulatory protein ArsR n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBB0_SPHS2
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADZ81521.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobact
cn_combo_scaffold_1596_12
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11906..12409
-----------------
DNA (504bp)
protein (168aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037C6299
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ADZ81522.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;"
cn_combo_scaffold_1596_13
GWF1_OD1_36_47, Nomurabacteria, Parcubacteria, Bacteria

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comp(12528..13544)
-----------------
DNA (1017bp)
protein (339aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ05913.1}; TaxID=1618769 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWF1_36_47.;"
Uncharacterized protein id=4646926 bin=GWF2_Bacteroidetes_33_38 species=Acanthamoeba castellanii genus=Acanthamoeba taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
cn_combo_scaffold_1596_14
Belliella baltica, Belliella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13804..14757
-----------------
DNA (954bp)
protein (318aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synth
Translation factor SUA5 n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z1B9_BELBD
translation factor SUA5
cn_combo_scaffold_1596_15
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14794..15087)
-----------------
DNA (294bp)
protein (98aa)
membrane protein n=1 Tax=Pedobacter agri RepID=UPI00029B1A79
Membrane protein {ECO:0000313|EMBL:KIA93413.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis
hypothetical protein
cn_combo_scaffold_1596_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15177..16613)
-----------------
DNA (1437bp)
protein (479aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000375A8E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95968.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1596_17
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16812..18365
-----------------
DNA (1554bp)
protein (518aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W5M8_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95967.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1596_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18489..21020
-----------------
DNA (2532bp)
protein (844aa)
Glycosyl transferase family 51 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W4Z1_DYAFD
Glycosyl transferase family 51 {ECO:0000313|EMBL:ACT95965.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (str
glycosyl transferase family protein
cn_combo_scaffold_1596_19
unknown

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21103..21429
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

cn_combo_scaffold_1596_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21426..22553)
-----------------
DNA (1128bp)
protein (376aa)
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:ACT93789.1}; EC=2.4.1.182 {ECO:0000313|EMBL:ACT93789.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadob
lipid-A-disaccharide synthase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003759765
lipid-A-disaccharide synthase
cn_combo_scaffold_1596_21
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22642..23091)
-----------------
DNA (450bp)
protein (150aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W1R0_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93790.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1596_22
Leptospira weilii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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23154..23720
-----------------
DNA (567bp)
protein (189aa)
PF14066 family protein n=1 Tax=Leptospira weilii serovar Ranarum str. ICFT RepID=N1WGX2_9LEPT
PF14066 family protein {ECO:0000313|EMBL:EMY76577.1}; TaxID=1218598 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira weilii serovar Ranarum str. ICFT.;"
hypothetical protein
cn_combo_scaffold_1596_23
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23740..24354
-----------------
DNA (615bp)
protein (205aa)
Sigma-70 region 2 n=2 Tax=Sphingobacterium spiritivorum RepID=C2G2V5_9SPHI
Sigma-70 region 2 {ECO:0000313|EMBL:EFK56811.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium
RNA polymerase, sigma-24 subunit, ecf subfamily
cn_combo_scaffold_1596_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24432..24764
-----------------
DNA (333bp)
protein (111aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQB9_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF15888.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 1943
cn_combo_scaffold_1596_25
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24768..25958)
-----------------
DNA (1191bp)
protein (397aa)
Periplasmic protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IXN8_CYCMS
hypothetical protein
Periplasmic protein {ECO:0000313|EMBL:AEL28035.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacteri
cn_combo_scaffold_1596_26
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25967..27460)
-----------------
DNA (1494bp)
protein (498aa)
Arylsulfatase A family protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G572_ECHVK
arylsulfatase A family protein
Arylsulfatase A family protein {ECO:0000313|EMBL:AGA80692.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echin
cn_combo_scaffold_1596_27
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27472..28932)
-----------------
DNA (1461bp)
protein (487aa)
RagB/SusD family protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G4Q1_ECHVK
RagB/SusD family protein
RagB/SusD family protein {ECO:0000313|EMBL:AGA79991.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola
cn_combo_scaffold_1596_28
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28953..32261)
-----------------
DNA (3309bp)
protein (1103aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G6R6_ECHVK
SusC/RagA family TonB-linked outer membrane protein
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:AGA80696.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echin
Displaying 28 items

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