ggKbase home page

cn_combo_scaffold_1770

Alias: CYT12_32

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1770_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1..240)
-----------------
DNA (240bp)
protein (80aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W3S6_DYAFD
sigma 54 interacting domain-containing protein
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophaga
cn_combo_scaffold_1770_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(575..1342)
-----------------
DNA (768bp)
protein (256aa)
MazG family protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAD7_RUNSL
nucleotide pyrophosphohydrolase
MazG family protein {ECO:0000313|EMBL:AEI47475.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 /
cn_combo_scaffold_1770_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1571..2650)
-----------------
DNA (1080bp)
protein (360aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6M1_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96082.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_1770_4
unknown

Not on your lists

comp(2647..3525)
-----------------
DNA (879bp)
protein (293aa)

This feature has no annotations

cn_combo_scaffold_1770_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3813..4952
-----------------
DNA (1140bp)
protein (380aa)
Cystathionine gamma-synthase {ECO:0000313|EMBL:ACT95187.1}; EC=2.5.1.48 {ECO:0000313|EMBL:ACT95187.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobac
Cystathionine gamma-synthase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYY1_DYAFD
cystathionine gamma-synthase
cn_combo_scaffold_1770_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4957..6015
-----------------
DNA (1059bp)
protein (353aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036E790F
acyl-CoA synthetase/AMP-acid ligase II
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein {ECO:0000313|EMBL:ACT92464.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;"
cn_combo_scaffold_1770_7
Nitritalea halalkaliphila, Nitritalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6067..6843
-----------------
DNA (777bp)
protein (259aa)
Uncharacterized protein n=1 Tax=Nitritalea halalkaliphila LW7 RepID=I5C8E9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EIM78101.1}; TaxID=1189621 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Nitritalea.;" source="Nitritalea halalkaliphila LW7.
hypothetical protein
cn_combo_scaffold_1770_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6840..7793)
-----------------
DNA (954bp)
protein (318aa)
Helix-turn-helix domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EB10_RUNSL
helix-turn-helix domain-containing protein
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACT92462.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermenta
cn_combo_scaffold_1770_9
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7846..9279
-----------------
DNA (1434bp)
protein (478aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI00035F751D
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 295
cn_combo_scaffold_1770_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9276..10157)
-----------------
DNA (882bp)
protein (294aa)
Bifunctional protein FolD n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W5A1_DYAFD
methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_1770_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10304..11011)
-----------------
DNA (708bp)
protein (236aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=471854 specie
NAD-dependent deacetylase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003604DE0
silent information regulator protein Sir2
cn_combo_scaffold_1770_12
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11030..13486)
-----------------
DNA (2457bp)
protein (819aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=929562 species="Bacteria; Bacteroide
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EZT5_EMTOG
cn_combo_scaffold_1770_13
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13867..16134
-----------------
DNA (2268bp)
protein (756aa)
Aconitase {ECO:0000313|EMBL:ADY52991.1}; EC=4.2.1.3 {ECO:0000313|EMBL:ADY52991.1};; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedo
aconitase (EC:4.2.1.3) rbh
Aconitase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SES5_PEDSD
cn_combo_scaffold_1770_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16236..16946)
-----------------
DNA (711bp)
protein (237aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003731DDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94961.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_1770_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16936..17658)
-----------------
DNA (723bp)
protein (241aa)
Pseudouridine synthase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWD2_DYAFD
pseudouridine synthase
Pseudouridine synthase {ECO:0000313|EMBL:ACT94963.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC
cn_combo_scaffold_1770_16
unknown

Not on your lists

17778..18509
-----------------
DNA (732bp)
protein (244aa)

This feature has no annotations

cn_combo_scaffold_1770_17
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18525..19547)
-----------------
DNA (1023bp)
protein (341aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXR1_DYAFD
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ACT95094.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacte
cn_combo_scaffold_1770_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19587..20465)
-----------------
DNA (879bp)
protein (293aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXR2_DYAFD
ppnK; inorganic polyphosphate/ATP-NAD kinase
cn_combo_scaffold_1770_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20469..21062)
-----------------
DNA (594bp)
protein (198aa)
CBS domain containing protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXR3_DYAFD
hypothetical protein
CBS domain containing protein {ECO:0000313|EMBL:ACT95096.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (stra
cn_combo_scaffold_1770_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21189..22007)
-----------------
DNA (819bp)
protein (273aa)
alpha/beta hydrolase n=1 Tax=Dyadobacter beijingensis RepID=UPI00036B9E7F
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACT95097.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (
cn_combo_scaffold_1770_21
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22259..24361
-----------------
DNA (2103bp)
protein (701aa)
ATP-dependent DNA helicase RecG n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6N2_DYAFD
ATP-dependent DNA helicase RecG
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:ACT96093.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (st
cn_combo_scaffold_1770_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24495..25130)
-----------------
DNA (636bp)
protein (212aa)
Peroxidase {ECO:0000313|EMBL:ACT96392.1}; EC=1.11.1.7 {ECO:0000313|EMBL:ACT96392.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dya
Peroxidase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VSF7_DYAFD
peroxidase
cn_combo_scaffold_1770_23
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25491..26087
-----------------
DNA (597bp)
protein (199aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003751B17
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADZ80833.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacteriu
cn_combo_scaffold_1770_24
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26294..27502
-----------------
DNA (1209bp)
protein (403aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000366269F
Uncharacterized protein {ECO:0000313|EMBL:KIA89511.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyung
FecR protein
cn_combo_scaffold_1770_25
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27743..30268
-----------------
DNA (2526bp)
protein (842aa)
TonB-dependent receptor n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VNU9_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:EPR71052.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-
TonB-dependent receptor plug
Displaying 25 items

View Taxonomy