ggKbase home page

cn_combo_scaffold_2142

Alias: CYT12_44

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2142_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1..726)
-----------------
DNA (726bp)
protein (242aa)
Glycosyl transferase family 11 n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVZ3_DYAFD
glycosyl transferase family protein rbh
Glycosyl transferase family 11 {ECO:0000313|EMBL:ACT91449.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (str
cn_combo_scaffold_2142_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(728..2083)
-----------------
DNA (1356bp)
protein (452aa)
Polysaccharide biosynthesis protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVZ2_DYAFD
polysaccharide biosynthesis protein rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ACT91448.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans
cn_combo_scaffold_2142_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2083..3018)
-----------------
DNA (936bp)
protein (312aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003755C02
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACT91447.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_2142_4
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3061..4083)
-----------------
DNA (1023bp)
protein (341aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Acinetobacter nosocomialis M2 RepID=V6IPX4_9GAMM
WagB {ECO:0000313|EMBL:AHB32837.1}; TaxID=470 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" so
eps2; hypothetical protein
cn_combo_scaffold_2142_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4080..5618)
-----------------
DNA (1539bp)
protein (513aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037DD7C4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91439.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_2142_6
unknown

Not on your lists

comp(5618..5767)
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

cn_combo_scaffold_2142_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5739..6923)
-----------------
DNA (1185bp)
protein (395aa)
Cell wall biogenesis glycosyltransferase-like protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y204_9SPHI
cell wall biogenesis glycosyltransferase-like protein Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
cell wall biogenesis glycosyltransferase-like protein
cn_combo_scaffold_2142_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6939..9098)
-----------------
DNA (2160bp)
protein (720aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVY0_DYAFD
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ACT91436.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermen
cn_combo_scaffold_2142_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9095..9766)
-----------------
DNA (672bp)
protein (224aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVX9_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT91435.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fer
cn_combo_scaffold_2142_10
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9830..10444
-----------------
DNA (615bp)
protein (205aa)
Putative acetyl transferase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVX8_DYAFD
putative acetyl transferase
Putative acetyl transferase {ECO:0000313|EMBL:ACT91434.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain
cn_combo_scaffold_2142_11
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10461..11657)
-----------------
DNA (1197bp)
protein (399aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036C11E6
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ACT91433.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 7008
cn_combo_scaffold_2142_12
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11682..12074)
-----------------
DNA (393bp)
protein (131aa)
Response regulator receiver protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVX6_DYAFD
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ACT91432.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans
cn_combo_scaffold_2142_13
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12348..12539)
-----------------
DNA (192bp)
protein (64aa)
Transcriptional regulator, LuxR family n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ESA7_EMTOG
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AFK02560.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophi
cn_combo_scaffold_2142_14
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12813..13652)
-----------------
DNA (840bp)
protein (280aa)
DNA-damage-inducible protein D n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DB84_9BACT
DNA-damage-inducible protein D {ECO:0000313|EMBL:EOZ96174.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
hypothetical protein
cn_combo_scaffold_2142_15
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14806..15264
-----------------
DNA (459bp)
protein (153aa)
virulence protein Tax=GWA2_Bacteroidetes_30_7_curated
Putative DNA-binding protein in cluster with Type I restriction-modification system id=5028926 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
cn_combo_scaffold_2142_16
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15261..15551
-----------------
DNA (291bp)
protein (97aa)
virulence protein Tax=GWA2_Bacteroidetes_30_7_curated
Putative DNA-binding protein in cluster with Type I restriction-modification system id=5028926 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
putative DNA-binding protein
cn_combo_scaffold_2142_17
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15901..19194)
-----------------
DNA (3294bp)
protein (1098aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingob
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYX0_PEDHD
cn_combo_scaffold_2142_18
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19191..19568)
-----------------
DNA (378bp)
protein (126aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQC0_CHIPD
bleomycin resistance protein
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACU58809.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;
cn_combo_scaffold_2142_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19588..21048)
-----------------
DNA (1461bp)
protein (487aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZT5_DYAFD
DNA repair nucleotidyltransferase/DNA polymerase
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:ACT93563.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" sourc
cn_combo_scaffold_2142_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21017..21829)
-----------------
DNA (813bp)
protein (271aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUB0_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96592.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
cn_combo_scaffold_2142_21
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21942..22760
-----------------
DNA (819bp)
protein (273aa)
Uncharacterized protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7X2A9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMS31640.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus
XRE family transcriptional regulator
cn_combo_scaffold_2142_22
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22862..23524
-----------------
DNA (663bp)
protein (221aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RS66_LEAB4
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADQ16718.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (stra
cn_combo_scaffold_2142_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23593..24663)
-----------------
DNA (1071bp)
protein (357aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
3-isopropylmalate dehydrogenase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003606FA3
3-isopropylmalate dehydrogenase
cn_combo_scaffold_2142_24
R_WOR_1_53_15, WOR-1, Bacteria

Not on your lists

comp(24692..25018)
-----------------
DNA (327bp)
protein (109aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_WOR_1_53_15_curated
hypothetical protein id=5102468 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
hypothetical protein
cn_combo_scaffold_2142_25
R_OD1_Magasanikbacteria_47_16, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(25015..25293)
-----------------
DNA (279bp)
protein (93aa)
nucleotidyltransferase n=1 Tax=Paenibacillus fonticola RepID=UPI00037971AC
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OD1_Magasanikbacteria_47_16_curated
DNA polymerase beta domain-containing protein
cn_combo_scaffold_2142_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25324..25557)
-----------------
DNA (234bp)
protein (78aa)
2-isopropylmalate synthase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003705C69
pyruvate carboxyltransferase
Pyruvate carboxyltransferase {ECO:0000313|EMBL:ACT94877.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strai
Displaying 26 items

View Taxonomy