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cn_combo_scaffold_2504_26

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(32307..34181)

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000360ADFB similarity UNIREF
DB: UNIREF100
  • Identity: 81.6
  • Coverage: 624.0
  • Bit_score: 1055
  • Evalue 0.0
Type VI secretion protein {ECO:0000313|EMBL:ESX22682.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium s similarity UNIPROT
DB: UniProtKB
  • Identity: 82.4
  • Coverage: 624.0
  • Bit_score: 1045
  • Evalue 0.0
type VI secretion protein, vc_a0110 family similarity KEGG
DB: KEGG
  • Identity: 80.8
  • Coverage: 624.0
  • Bit_score: 1028
  • Evalue 0.0

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Taxonomy

Mesorhizobium sp. LSJC264A00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1875
ATGGATCGGATCTTCCTGGAATACTACGAGGAGGAACTGACCCACATACGCAGCCTCGCTGCAGAATTTTCCGCCATGCACCCGGCGATCGCGCGCAACCTGTCGCTGGACACCGCGCCCTGCCCCGATCCCTATGTCGAGCGGTTGCTCGATGGCGTGGCCTTCCTCGCGGCCCGTACTCGATTGAAGGTCGACGCCGAGCGTTCGCGGTTTGCGCGCAGCGTACTCGACGTGCTCTACCCGGACCTCGTGTCGCCGACTCCGGCGACTGCCATGGCCGTGCTCAAACCCGGGCAGCAGATACAGACGATGAACGCAGGCCATGTCGTCAAGCGCGACACGCGGCTGATATCGAGCCTGCAGCCGGGGCTCTCGACCCGCTGTACCTTCAGCACCGTGCAGGATGTGACGCTCTGGCCGATAGCCATCGGTTCCATCGGTTATTTCCAGGACCGCAGCGCACTTGCCGTGGCCGGCATAGTGCCACCGCAGGATATCGTGGCCGAGGCGGCGATCCGGATCGTGATAAACCGCACGGGCAAGGGCAAGCTCGCCGAACTGGCGCTGGATCGCCTCGATCTGTACCTGGCCGGGCGAACCAAAGCCCCGCTGTTGTTCGACACGATCTTCGGCGCCTGCGCGGGCGTCGCCGCGAGACCAGAGGGAAAATCCGCCAAGCTCGTACCCCTGCCCGACGCGGATATGGTGGGAATTCTGGACACCGAGGCATTGATGCCGAGAAGCCGGCCTACCTTCGAGGGCTACCGGCTGCTGCGCGAGTATTTCATGATGCCCGAGCGGTTCCATTACGCCCGGGTCACGGGTCTGCAGCCGGTCATGCGCGCCTGCGAGGCGGGCCTGGAACTGGTGTTCCTGCTGCGCAGGCCTGTCCCGGAACTGGCCGACCTGTCGCCCCAGGATTTCGAGCTCTTCGCCACGCCGCTCATCAATCTCTTCGAGCGCGAATGCAACGTCGTCGAACTCGACAGCCGCAAGACACGGCAGGTGCTCTACGTAGACAGAACGCGGCCGCGGGACTTCGAGATCTACCGCATCACCCATGTCGAGGACGCGGAGGCCGAAGGGCCGGACGCCGAGATCCCGGCCCTGTTCAGCCTTGGGCAGAACCGCGGCAGTGGATGGGTCTATTCGACGGAGCGGCGGCCGCGCCGGCCGACGGAGGATGAGCGCCGGGAAGGCGTGACCCGCACGTCCTATGCCGGCGACGACGTGTTCCTGGCATTTTCCCGTCCGGCGGGAAGCACGGCCAACCGCGCGCTCAGGCGCGTGGAAGTGACGGCGCTCTGCACAAATCGCGACCTGCCGATCCTGGACGATACGCCGAACCTGACGCTGGAAAGCGGCGATCCTGTGGAAGCCGTACGCTTGCTCGGCGCCCTGCGGGCGCCGCGCCCGTCCATTCCCGCGGCGCTGCCGGCCGGGGCGGACGGCGAATCCCGTGCCGACGAGCTTGCCTGGCGCATGGTCGCCCAACTGTCCCTCAACTTCCTCAGCCTCGCCAAGGAAGGGCGTGGGGTCGACCCGCTGCACGCGTTGCTTGACCTCTATGCCGATCGTGGAGACCCGGCTCTCGCCCGGCACGTGCGTTCGATCGCGCGGATCGACTCGCGCCCGGTAGTCGAGCGGCTGGCGATCGAGGGGCCGATGTGCTTCGGCCGGGGAACGGAAGTCGTGCTGCATGTCGACCAGTCGGTCGTTTCGGGCCACAGCACCCTGTTGCTGTCGGCCTTGCTGTCGCGGTTGTTTGCCCGCCATGCGGGCATCAACGGCTTCGTGCGGACACGCACGCGGCTGCTCCAGAAGCAGGAGGACGTGCCATGGCCGATGACGCCCGGCAACCGCTTCCTGATATAG
PROTEIN sequence
Length: 625
MDRIFLEYYEEELTHIRSLAAEFSAMHPAIARNLSLDTAPCPDPYVERLLDGVAFLAARTRLKVDAERSRFARSVLDVLYPDLVSPTPATAMAVLKPGQQIQTMNAGHVVKRDTRLISSLQPGLSTRCTFSTVQDVTLWPIAIGSIGYFQDRSALAVAGIVPPQDIVAEAAIRIVINRTGKGKLAELALDRLDLYLAGRTKAPLLFDTIFGACAGVAARPEGKSAKLVPLPDADMVGILDTEALMPRSRPTFEGYRLLREYFMMPERFHYARVTGLQPVMRACEAGLELVFLLRRPVPELADLSPQDFELFATPLINLFERECNVVELDSRKTRQVLYVDRTRPRDFEIYRITHVEDAEAEGPDAEIPALFSLGQNRGSGWVYSTERRPRRPTEDERREGVTRTSYAGDDVFLAFSRPAGSTANRALRRVEVTALCTNRDLPILDDTPNLTLESGDPVEAVRLLGALRAPRPSIPAALPAGADGESRADELAWRMVAQLSLNFLSLAKEGRGVDPLHALLDLYADRGDPALARHVRSIARIDSRPVVERLAIEGPMCFGRGTEVVLHVDQSVVSGHSTLLLSALLSRLFARHAGINGFVRTRTRLLQKQEDVPWPMTPGNRFLI*