Advanced Search

ACD4_25_10 Annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
murein transglycosylase	similarity	KEGG DB: KEGG	42.8	236.0	180	5.60e-43	doi:FH5T_03820
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)	iprscan	interpro DB: TMHMM	null	null	null	null	doi:FH5T_03820
seg (db=Seg db_id=seg from=12 to=22)	iprscan	interpro DB: Seg	null	null	null	null	doi:FH5T_03820
Lysozyme-like (db=superfamily db_id=SSF53955 from=84 to=227 evalue=4.2e-23)	iprscan	interpro DB: superfamily	null	null	null	4.20e-23	doi:FH5T_03820
no description (db=Gene3D db_id=G3DSA:1.10.530.10 from=86 to=237 evalue=7.9e-21)	iprscan	interpro DB: Gene3D	null	null	null	7.90e-21	doi:FH5T_03820
SLT (db=HMMPfam db_id=PF01464 from=91 to=197 evalue=5.4e-14 interpro_id=IPR008258 interpro_description=Lytic transglycosylase-like, catalytic)	iprscan	interpro DB: HMMPfam	null	null	null	5.40e-14	doi:FH5T_03820
Tax=ACD4		UNIPROT DB: UniProtKB	98.0	293.0	542	2.80e-151	ggdbv1_70106
membrane-bound lytic murein transglycosylase precursor (EC:3.2.1.-) alias=ACD2_C00034G00013,ACD2_50.13350.60G0013,ACD2_50.13350.60_13 id=35157 tax=ACD2 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=BD1-5 organism_desc=BD1-5	similarity	UNIREF DB: UNIREF90	66.6	null	422	1.20e-115	doi:FH5T_03820

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.