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berkeley_reactor_200306_biofilm_scaffold_47405_14

Organism: 2019_SCN_bioreactor_200211_biofilm_Bacteroidetes_44_168

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 18146..18715

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTN4_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 41.5
  • Coverage: 188.0
  • Bit_score: 151
  • Evalue 4.90e-34
RNA polymerase {ECO:0000313|EMBL:KIA96510.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 37.8
  • Coverage: 188.0
  • Bit_score: 158
  • Evalue 7.40e-36
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 37.8
  • Coverage: 188.0
  • Bit_score: 143
  • Evalue 3.80e-32

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Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 570
TTGAAGCAATATCACAGATATTCGGATAAAGAGTTAATAGATCTTGTAGCAGAAGATAATGAGGCTGCTTTCAGGGAATTATATGAAAGGTATTACAAAAGGCTGCTTGTTTTTGCCTTTGCAAAAACTGATAATTACGGTGATGCAGAGGAAATTGTGCAAATTGTTTTTGTAAACCTCTGGCAGAGAAGAAGCTCAATAAAACTTAAATACAGTTTTCATACCTATATTGCTGCAGTAACCAAATATGAAATTCTTGCGTTTTTTGCCAGTAAAAAAAGACAGGATACACTTAAAAAGAATGCATTCAACAGTTACAATCTCCCCGATAGTGCTCCTGGTAATTTCCTGACTTTTAATCAATTACGGGACGAAATTGAAAAAACCGTGAGGCTTCTTCCCGAGAAATGCAGGCTTGTTTTTCGTTTGAGCCGCGAAGAAGGACTGACAGAAAAAGAGATATGCCGGGCGCTTGATATAGCTCCCAAAACAGCGCAGGCACATTTGAGTAAGGCACTTCGTGTTATTCGCTCCTCTCTGAACCATATAATGCAGGCGGTTTTTTTATAG
PROTEIN sequence
Length: 190
LKQYHRYSDKELIDLVAEDNEAAFRELYERYYKRLLVFAFAKTDNYGDAEEIVQIVFVNLWQRRSSIKLKYSFHTYIAAVTKYEILAFFASKKRQDTLKKNAFNSYNLPDSAPGNFLTFNQLRDEIEKTVRLLPEKCRLVFRLSREEGLTEKEICRALDIAPKTAQAHLSKALRVIRSSLNHIMQAVFL*