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berkeley_reactor_200306_biofilm_scaffold_47405_17

Organism: 2019_SCN_bioreactor_200211_biofilm_Bacteroidetes_44_168

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 23458..25137

Top 3 Functional Annotations

Value Algorithm Source
Putative nutrient binding outer membrane protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WKQ9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 55.4
  • Coverage: 549.0
  • Bit_score: 592
  • Evalue 4.20e-166
Putative nutrient binding outer membrane protein {ECO:0000313|EMBL:EPR67299.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.4
  • Coverage: 549.0
  • Bit_score: 592
  • Evalue 5.90e-166
RagB/SusD domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 56.1
  • Coverage: 540.0
  • Bit_score: 589
  • Evalue 5.90e-166

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Taxonomy

Cyclobacterium qasimii → Cyclobacterium → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1680
ATGAAACGCAATAATACTATTTTAATCATACAACAAAAGTTGCCTTTTGTCTGCAGCTTTGCTGTGATCTTTTCGGCGGTCTTTATATGTTCCTGTACTAAGAATGTTCTTGATAAGACGCCTGCTTCGAGCTATACCGACGATGCAGTATGGAAATCTACTAATTTGATCACAGCCTTTGTAGATAACACGTACAGGGTAATGCCTACAGGATATACCTATCGTTCGCTTAAGCTGGCTACATTAACTGACGAGATTTACAGGAGAGGCGGAGGGAACAATGTGGCGAATGCAGGGAATGTAACGGCAGCCGCACTGGGAATGCTTGATTTTTGGGTATCGCCTAATGGGTACAGCTATTGGCCCGTCATCACCAACTGCAACATTTTTTTTAAAAATATTGAAGCTGCACCTGTTGAGGAATCATTAAAAAAGAGGATGACCGGTGAAATGAAATTTCTGAGAGCTTATGCATATTTCAACCTGGTTTCCTTCTTTGGAGGTGTGCCGTTAATTACCAGCCCTTTCAACCTGACCGATGATTTTAACCTGCCAAGGAACACTTATGATGAATGTATGGATTTTGTCGTTAAGGAATTTGATGCTGCTGCTGATTTATTACCGCTTACGTATGCCGCTAAAGACCTGGGAAGACTTACCAAAGGAGCAGCCCTTGCTGCAAAATCCAGGGCATTGTTGTATATGGCGAGCCCGTTGAATAATCCCTCAAACGCTACTGAAAAGTGGGAAGCCGCAGCAAAAGCTGCAAAAGCCGTAATTGATCTGAATGTTTATTCCTTATTTCCCAGTTATAAAGATCAGTTCCTGGTAGAAAATTCATACAACCCCGAAGCTATCTGGACACGACCCTATAATTATTCTGTTTCTTCTGAGGGTACCTATCTTGAATTGCAGTTGTATCCCAATGGATACAGCGGATTTGGCCAGGTTGCTCCCTATCACAATATAGTTGACTCTTTTGAAATGATAAGTGGTAAACTTCCCAAAGATGATCCCTCCTATGATCCGCAAAATCCTTATGTTAACCGGGATCCCCGCTTTTATGCAACTATTTTGTATGATGGCGCTCCGTTTAAAGGCAGGGAAGTAGAGACGTTCATTCCGGGTGGAAAGGATTCAAGAGAAGGACCTATTTCAAGCTGGAATGCTACAGAGACAGGTTATTATGTAAGAAAATTTATCGAGGAATCAATTACCGATCCAAGTACAACTAACCAGGGTAACCAATCCTGGATATTCTTCAGGTATGCTGAAATTTTATTAAATTATGCTGAAGCAGAATATTTTCTTGGCGAAGAGGCTACTGCAAGAGACTACGTCAACATGGTAAGGAGCAGGCCAGGTGTGCAAATGCCTGCAATAACCGAAGGAGGTGCACAATTGCTTACCAGGATACAGCACGAACGCCAGATTGAATTATGTTTTGAAGATCACCGGTATTTTGATGTCCGCCGCTGGAAGATTGCGCCGGTTGCACTTAATGTTCTTCCTAAGAGAATGGATATCGTCAAAGATCCTGTTACAGGAAAAAAGACATATACTGTAAATACAATGGAGAACTTCACCTTTGGCTTTACAGATAAAAATTATTTATTGCCAATACCCCGGTCGGAAATTGATAAAAATCCACAATTGGCACAGAACCCGGGGTATGATTAA
PROTEIN sequence
Length: 560
MKRNNTILIIQQKLPFVCSFAVIFSAVFICSCTKNVLDKTPASSYTDDAVWKSTNLITAFVDNTYRVMPTGYTYRSLKLATLTDEIYRRGGGNNVANAGNVTAAALGMLDFWVSPNGYSYWPVITNCNIFFKNIEAAPVEESLKKRMTGEMKFLRAYAYFNLVSFFGGVPLITSPFNLTDDFNLPRNTYDECMDFVVKEFDAAADLLPLTYAAKDLGRLTKGAALAAKSRALLYMASPLNNPSNATEKWEAAAKAAKAVIDLNVYSLFPSYKDQFLVENSYNPEAIWTRPYNYSVSSEGTYLELQLYPNGYSGFGQVAPYHNIVDSFEMISGKLPKDDPSYDPQNPYVNRDPRFYATILYDGAPFKGREVETFIPGGKDSREGPISSWNATETGYYVRKFIEESITDPSTTNQGNQSWIFFRYAEILLNYAEAEYFLGEEATARDYVNMVRSRPGVQMPAITEGGAQLLTRIQHERQIELCFEDHRYFDVRRWKIAPVALNVLPKRMDIVKDPVTGKKTYTVNTMENFTFGFTDKNYLLPIPRSEIDKNPQLAQNPGYD*