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berkeley_reactor_200306_biofilm_scaffold_71385_6

Organism: 2019_SCN_bioreactor_200211_biofilm_Bacteroidetes_44_168

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(8050..8646)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7R3_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 48.9
  • Coverage: 186.0
  • Bit_score: 181
  • Evalue 8.00e-43
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 48.9
  • Coverage: 186.0
  • Bit_score: 181
  • Evalue 2.30e-43
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 48.9
  • Coverage: 186.0
  • Bit_score: 181
  • Evalue 1.10e-42

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 597
TTGCGTACAGGTGATTTATATAAGGAGAAAGAATTATTGGCTTTGATTGCAAAAAGTGATGAAGCCGCGTTTGCAGAATTGTTCGACCATTACCGTAACAGAATATACAGCAGTGCACGGAAACTTTCGCGGTCGGCTGTTATAGCAGAAGAGATTGTACAAAATGTTTTTTTAAAAATATGGCTGAACAGAGCTGATCTCACGGGTGTAAATAATTTCAGCGCTTATCTGTTCGTTATTACCCGCAACGAAGTATACCTCGCCTTAAATCGTATAGCCCGCAGTTATAAGATCCATTCGCTTTTCAGCAAAGAGCAGCCCCCGAGCGATAATGATAATGAAAGGCGCTTCATGGACAGGGAATATCAAAATTTACTGCAAAAAGCGATTGAGCGGCTGCCTGTTCAGCAAAAAAAAGTATATCAGTTAATGAAAGTGCAGGGACTGAAACGGGAGGAAGCGGCGAGCCTGTTACGCGTACATCCCGAAACAGTAAAGTCTCACTTGGCGCAGGCTGTGAAAAGTGTGCGCAGTTATTGTCTGCTGCATTTGCACCTGCTCTATGGGTTGGTATTTTGCTTCTCTTTCCTTTCCTGA
PROTEIN sequence
Length: 199
LRTGDLYKEKELLALIAKSDEAAFAELFDHYRNRIYSSARKLSRSAVIAEEIVQNVFLKIWLNRADLTGVNNFSAYLFVITRNEVYLALNRIARSYKIHSLFSKEQPPSDNDNERRFMDREYQNLLQKAIERLPVQQKKVYQLMKVQGLKREEAASLLRVHPETVKSHLAQAVKSVRSYCLLHLHLLYGLVFCFSFLS*