ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_29408_26

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(25141..26136)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 331.0
  • Bit_score: 592
  • Evalue 3.50e-166
DNA-directed RNA polymerase subunit alpha n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI98_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 331.0
  • Bit_score: 592
  • Evalue 2.50e-166
DNA-directed RNA polymerase subunit alpha similarity KEGG
DB: KEGG
  • Identity: 89.1
  • Coverage: 331.0
  • Bit_score: 592
  • Evalue 7.10e-167

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 996
ATGGCCATTTTAAATTTCCAGAAACCAGACAAGATCATTCTGCAAAAAGCGACTGATTTTGAAGCTCAATTCGAATTTCGTCCTTTGGAGCCGGGTTACGGTGTTACCATCGGTAATGCACTGCGCAGGGTATTGCTGAGCTCGCTCGAAGGTTACGCGATCGTAGGGGTTAAGATCGAAGGTGCCGACCACGAATTCGCTACACTGAAGGGTGTAACGGAAGACGTCGTGGAAATCATCCTCAACCTGAAGCAGGTTCGGTTCAAGAAGAAAGTTGAACATGAAGTGTCCCAGGAAAAGATCACCCTGAGCCTGAAGAACAGGACGGAATTTACCGCCGGAACCCTGGGTGAAGCAACCCCCAGCTTCGAGGTAATGAACCCCGGTCTGCTCATCTGTACCCTGGATTCTTCTGCAAAGCTGGACATCGAGATCACCATCGGCAAGGGCCGTGGCTATGTTCCCGCAGAAGACAACAAACCTAAAGACGCCCCCTTCGGCTATATCCCGACGGATGCTATCTTCACACCGATCAAGAATGTGAAGTACTCCATCGAGAACACCCGCGTGGAACAACGCACGGACTTCGAAAAGCTGATCATGGAAGTATCCACCGATGGTACCATCCATCCGGAAGAAGCCGTTAAGCAGGCTTCCCGCATCCTGATCCAGCACCTGATGATCATCACCGATGAGAACATCACTTTCGATAACAAGGAAGAGAAGAAGGAAGACCTGGTGGACGAGCAGACACTGCAGCTGCGTAAGATCCTGAAGACGCCGCTGGAAGATCTCGATCTTTCCGTACGTGCCTTCAATTGTCTGAAAGCAGCCAAGATCAACAGCCTTAGCGAGCTGGTGACCTATGAGCAGGAAGACCTGATGAAGTTCCGCAATTTCGGTCAGAAATCACTGGCTGAGATCGAGCAGGTTCTGGGCGAAAGAGGCTTGCACTTCGGTATGGACCTGGGCAAGCTGAAAGTAGATGATGAGTGA
PROTEIN sequence
Length: 332
MAILNFQKPDKIILQKATDFEAQFEFRPLEPGYGVTIGNALRRVLLSSLEGYAIVGVKIEGADHEFATLKGVTEDVVEIILNLKQVRFKKKVEHEVSQEKITLSLKNRTEFTAGTLGEATPSFEVMNPGLLICTLDSSAKLDIEITIGKGRGYVPAEDNKPKDAPFGYIPTDAIFTPIKNVKYSIENTRVEQRTDFEKLIMEVSTDGTIHPEEAVKQASRILIQHLMIITDENITFDNKEEKKEDLVDEQTLQLRKILKTPLEDLDLSVRAFNCLKAAKINSLSELVTYEQEDLMKFRNFGQKSLAEIEQVLGERGLHFGMDLGKLKVDDE*