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berkeley_reactor_200306_biofilm_scaffold_49244_18

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 21675..22103

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, MarR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUJ7_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 60.3
  • Coverage: 131.0
  • Bit_score: 150
  • Evalue 8.30e-34
Contig38, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77345.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 142.0
  • Bit_score: 172
  • Evalue 3.70e-40
MarR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 60.3
  • Coverage: 131.0
  • Bit_score: 150
  • Evalue 2.30e-34

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Taxonomy

Pedobacter sp. NL19 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 429
ATGTCAACAATCAGCCCTTCTTTGAAGTTTGTCATGAACCTGGCAAGATTGCAGGCGGTGATGTCCCGGAAATTCAATCGGCTCAGCATCCACGGCATCAGCCTGACCGACTTTATGATCCTTTCCCTCCTGGACCAGGCGCCCGGCAGGAAGCTGCGCCGGGTGGACCTCGCTGAAAGTGTCGGTCTCACGGCCTCGGGCATTACCCGTATGCTGCTTCCTTTGGAAAAGATAGGCCTGGTGGAACGGGAAGCCAGCGAAAGAGATGCCCGTGTGAGCTATGTCGTACTGACGGCGGCGGGGAAGCAGCTGTATGAGCATGCAAAAGATACGGCCAACGCCATCGCTAAGGAGACCATACCGCCGGAGGTGGCCAAAAACCTCTCGCTTGTTGAACTGTACCGCCAGCTCGGAATAACTATTAAGTAG
PROTEIN sequence
Length: 143
MSTISPSLKFVMNLARLQAVMSRKFNRLSIHGISLTDFMILSLLDQAPGRKLRRVDLAESVGLTASGITRMLLPLEKIGLVEREASERDARVSYVVLTAAGKQLYEHAKDTANAIAKETIPPEVAKNLSLVELYRQLGITIK*