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berkeley_reactor_200306_biofilm_scaffold_49244_24

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(25543..26109)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EH77_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 36.2
  • Coverage: 160.0
  • Bit_score: 119
  • Evalue 3.50e-24
Uncharacterized protein {ECO:0000313|EMBL:KIA93571.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 34.1
  • Coverage: 179.0
  • Bit_score: 123
  • Evalue 2.00e-25
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 32.4
  • Coverage: 179.0
  • Bit_score: 103
  • Evalue 4.30e-20

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Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 567
ATGACCGACCTCTTCCATTCCGGGTTTGACCATTTTTACAACAGTTACTGGCGGCTGCTGTACATCACCGCTTTTTCAAAAACAGGCGATCATGATGACAGCGTGGATATCGTGCAGGAGCTGTTTATCCATCTCTGGGAGAACAGGTCCACCATCCGGATCACCGGGACAGTAGAAGCGTATCTGCTTACCAGTCTGCGCAACAGGATCTTCAATCACTTCAGGAATAAAGGGACCCGGGAGAAAGTAAGGGCAGACTATGCCCGTTTTGTAGATGTGCTGGTAAGTCATAAGGCCGCCTTCATCGAGGAGGAGACCATGCGCCATATGGCGGAAGAGGCGGTGCAGAAGGCGGTGCAGCAATTGCCTGAGAAAATGAAATATATCCTCGTCCAGAATAAATATCACCAGAAGAGCATTCAGCAGCTGTCGGAAGAGCTGAACATTGCCCCGCAAACCGTAAAGAACCAGCTGACAAAGGCGCTACGATATATCGAGGACCTGCTACGGCGGGACCATGCAAAGGAGATTACCTTTTTGGTGCTGGCGTTTACGATACAGGCGTAA
PROTEIN sequence
Length: 189
MTDLFHSGFDHFYNSYWRLLYITAFSKTGDHDDSVDIVQELFIHLWENRSTIRITGTVEAYLLTSLRNRIFNHFRNKGTREKVRADYARFVDVLVSHKAAFIEEETMRHMAEEAVQKAVQQLPEKMKYILVQNKYHQKSIQQLSEELNIAPQTVKNQLTKALRYIEDLLRRDHAKEITFLVLAFTIQA*