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berkeley_reactor_200306_biofilm_scaffold_49244_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 26238..27287

Top 3 Functional Annotations

Value Algorithm Source
anti-sigma factor n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3E2D2 similarity UNIREF
DB: UNIREF100
  • Identity: 31.0
  • Coverage: 316.0
  • Bit_score: 129
  • Evalue 3.70e-27
anti-FecI sigma factor FecR similarity KEGG
DB: KEGG
  • Identity: 27.5
  • Coverage: 349.0
  • Bit_score: 128
  • Evalue 2.30e-27
Putative anti-sigma factor {ECO:0000313|EMBL:EDM36933.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 30.9
  • Coverage: 337.0
  • Bit_score: 128
  • Evalue 1.50e-26

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Taxonomy

Pedobacter sp. BAL39 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1050
ATGGATCTCAAAGAAGATGAACTGGCTACGTTATTACAGCGTTACGAAGACGGCAGCGCTTCTGAAGAGGAGCGGCAATTGCTGGAGCAATGGTACCAGCAGCTGGATGTTGCCGATGGAATGGTCTGGGCCTCTGCTGAACAGGAGGAAGCGTCAAAGGCGCGGATGTATACGTTTATCCATCAGGACGCCCGTATGCGTAGACCGGGTCATCCAGGGCGGCATGGGCTGCTGATCAGGATGCTGCGTATAGCGGCTGTGCTGTTGCCGGCGGTAGCGTTGATATGGCTGATAAGACATCCGCACGGTGATCATACGGTCGTGGCCGGGACAGAAGCTCTGCGCACCGATAAGAACATCGCTGTACAGCACGAACCGGCGCCCGCCATACATATGCTCACGGCCCGCAGTGGGAAGAAGGACCTTGTAAAGACGCTGTTGCCGGATGGCAGCACCGCCTGGCTGAATACCGCATCGGTATTGAAGTATCCGGAAAAGTTCGGCGGCGCTGAACGGGTCGTGGAAGTAATGGCGGGCGAAGTATTCTTTAATGTTGCGAAAGATGGAGCTCATCCCTTCCGTGTACGGACGGGCTCCATTGTTACCACTGTGCTGGGCACTTCCTTCCTTGTCAGGCAATCCTTTGAAAAGAACACGTTGGAGATAAGCGTAAAGACCGGCGCCGTCAAAGTGGAGAAGACGAACGAATATGGGGCAAGCGCGCTGGTGGGGCGTAACCTTTCGCCCGGTGATCGGCTGAGGCTGGATACAGCTGCCAATACTTACCAGCTGAAAAAGATCGCTGTGGATGGGATCGCTGCCTTCTTACAGGGCCGGCTGATATATGACGACGCCAGGCTGGAAGAAATTGCCTATGACCTTGGCAGAAAGTACGGTGTCTCCATTCATTTTGGTAATGATAAGCTGAAGGATGCCCGTTATCGCATCAGCTTTGACGATATGCCTTTAAAAGATGCGCTGCTGATACTCGCCACATTTACGGGCACCCATATTGAAAAAGACGATCAAGGGAAATATATCATCAAATAA
PROTEIN sequence
Length: 350
MDLKEDELATLLQRYEDGSASEEERQLLEQWYQQLDVADGMVWASAEQEEASKARMYTFIHQDARMRRPGHPGRHGLLIRMLRIAAVLLPAVALIWLIRHPHGDHTVVAGTEALRTDKNIAVQHEPAPAIHMLTARSGKKDLVKTLLPDGSTAWLNTASVLKYPEKFGGAERVVEVMAGEVFFNVAKDGAHPFRVRTGSIVTTVLGTSFLVRQSFEKNTLEISVKTGAVKVEKTNEYGASALVGRNLSPGDRLRLDTAANTYQLKKIAVDGIAAFLQGRLIYDDARLEEIAYDLGRKYGVSIHFGNDKLKDARYRISFDDMPLKDALLILATFTGTHIEKDDQGKYIIK*