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berkeley_reactor_200306_biofilm_scaffold_113606_11

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 9074..9415

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase, omega subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB03_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 87.6
  • Coverage: 113.0
  • Bit_score: 199
  • Evalue 9.40e-49
DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 87.6
  • Coverage: 113.0
  • Bit_score: 199
  • Evalue 2.70e-49
DNA-directed RNA polymerase, omega subunit {ECO:0000313|EMBL:AEW01350.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.6
  • Coverage: 113.0
  • Bit_score: 199
  • Evalue 1.30e-48

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 342
ATGAGCAGACTAAGAAGGCAGATTAATGCCAATACCACGAATGTCGTGGAAACCAAGAATCTCACCGATATCAAGGCGAAGACTGGCAATCTGTATGAGTCAATTGCTATCATCGCTAAGCGGGCTAACCAGATCAATATCTCCCTGAAGGAAGAGCTTCACAACAAACTGGAAGAGTTTGCCAGCCATACCGACAGCCTGGAGGAGATCCATGAGAATAAAGAGCAGATCGAAATCTCCAAGGCATATGAAAGAATGCCCAATCCCGCGCTGCTGGCTACCCAGGAGTTCATGGATGAGAAGATTTACTACCGCAAGAATGACGATGATCTCTTTAAATAA
PROTEIN sequence
Length: 114
MSRLRRQINANTTNVVETKNLTDIKAKTGNLYESIAIIAKRANQINISLKEELHNKLEEFASHTDSLEEIHENKEQIEISKAYERMPNPALLATQEFMDEKIYYRKNDDDLFK*