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berkeley_reactor_200306_biofilm_scaffold_113606_23

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(18650..19321)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIP8_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 46.1
  • Coverage: 219.0
  • Bit_score: 200
  • Evalue 1.10e-48
Putative two-component response regulator {ECO:0000313|EMBL:GAO45286.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.0
  • Coverage: 219.0
  • Bit_score: 213
  • Evalue 2.30e-52
two component transcriptional regulator, LuxR family similarity KEGG
DB: KEGG
  • Identity: 46.1
  • Coverage: 219.0
  • Bit_score: 200
  • Evalue 3.10e-49

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Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 672
ATGTCCTCCTTAAAACGACCCGTTAAGATTGCAATGGTGGACGACCATATCCTGCTCCGCGATGCCCTGGCTACAGTCATCGACCGGTTTGAAAATTGCAAAGTGATCATGCTGGCAGCGCACGGAAAAGAGTTATTGGACAAACTACAGCCTGACGACCTGCCGGACCTGGTCATACTGGACCTCAATATGCCCGAAATGGACGGGTATGAGACGGCCAGGCACCTGCGCATGAAATACCCCGGCATCTATGTGCTCATCCTTACCATGTATGATTCCGAGATAACGCTCCTCCGATTGTTACAGGCTGGTGCGAGGGGGTTCCTTAAAAAGGACATTCATCCGGGAGAGCTTCACATGGCCATCCAATCCGTCATGTCCAGCGGCTATTTCTATTCCTATAACTCGGCAGGCAAGCTGGTGAACCTGTTTAAAAAGGACAAATCGAACAATAACCAGGCAGACCGGCTTTCCCTTAGCGAGAACGAGGTCACCTTCCTGAAGCTGGCCAGCACGGACATGACCTATAAAGAGATAGCCACCATGATGAAAATAAGCCCCAGAACAGTGGATAACTACAGGGATGCTTTATTTATAAAATTGAATGTAAAAAGCCGGGTAGGGCTTGCGATCTATGCCATTAAAAGTGGAGTGGTCACCCTGGAGTATTAG
PROTEIN sequence
Length: 224
MSSLKRPVKIAMVDDHILLRDALATVIDRFENCKVIMLAAHGKELLDKLQPDDLPDLVILDLNMPEMDGYETARHLRMKYPGIYVLILTMYDSEITLLRLLQAGARGFLKKDIHPGELHMAIQSVMSSGYFYSYNSAGKLVNLFKKDKSNNNQADRLSLSENEVTFLKLASTDMTYKEIATMMKISPRTVDNYRDALFIKLNVKSRVGLAIYAIKSGVVTLEY*