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berkeley_reactor_200306_biofilm_scaffold_124345_14

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(17359..17949)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily id=3597302 bin=GWF2_Bacteroidetes_49_14 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab) similarity UNIREF
DB: UNIREF100
  • Identity: 38.3
  • Coverage: 196.0
  • Bit_score: 156
  • Evalue 1.60e-35
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 38.9
  • Coverage: 190.0
  • Bit_score: 136
  • Evalue 4.80e-30
Tax=GWF2_Bacteroidetes_49_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 38.3
  • Coverage: 196.0
  • Bit_score: 156
  • Evalue 2.20e-35

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Taxonomy

GWF2_Bacteroidetes_49_14_curated → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 591
ATGCCGGAGCCATCGTTCGAAGAGCGCTTCTTATTGCAGCAGGTGGCGGAAGGAGACGAAAAGGCCTTCCATGTCCTGTACGACCAGTATTCCCCCCGGATCTATTCCCTGGGCATGCACCTTACCCGGGATGCCTATATGGCAAGGGAGCTCGTTCAGGACATTTTCGAAAAGCTCTGGAAAAAAAGGGACACGCTGCCCTCCATCGGCAACTTTCCCGCCTATATCAAGGCCATGGTCCGGAACACAACCAACAATCACCTGAAGCGCATGGCCCACGAACGCTTGATCCTGCAGCGGATGGCTTCCGACCAGCCCCTGGGCGAGCTCAGTACGGACGCCGCCATGGAACAGGGCCATTTCCGCCGGCTGCTGCAGGAAGCCATCGACCGGCTGTCCCCTCGTACCCGGGAAGTTTACCTGCTCAGTCGCTCCGAAGGCCTTAAGAACGCGCAGATCGCTGAAAAGCTCGGCATCAGCATCTATACGGTCAAGGAACACCTCGCGAAGGCCCTGGCTTCTATCCGCGAATACCTCGACGGCCGGCTGGATCTGGTCGTAGCAACCGTAATGTTATATTTTTATCGGTAG
PROTEIN sequence
Length: 197
MPEPSFEERFLLQQVAEGDEKAFHVLYDQYSPRIYSLGMHLTRDAYMARELVQDIFEKLWKKRDTLPSIGNFPAYIKAMVRNTTNNHLKRMAHERLILQRMASDQPLGELSTDAAMEQGHFRRLLQEAIDRLSPRTREVYLLSRSEGLKNAQIAEKLGISIYTVKEHLAKALASIREYLDGRLDLVVATVMLYFYR*