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berkeley_reactor_200306_biofilm_scaffold_124345_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(34544..37690)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002F53F05 similarity UNIREF
DB: UNIREF100
  • Identity: 45.0
  • Coverage: 1062.0
  • Bit_score: 909
  • Evalue 2.90e-261
TonB-dependent receptor similarity KEGG
DB: KEGG
  • Identity: 43.2
  • Coverage: 1061.0
  • Bit_score: 862
  • Evalue 1.20e-247
TonB-dependent receptor {ECO:0000313|EMBL:ADY53518.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.2
  • Coverage: 1061.0
  • Bit_score: 862
  • Evalue 5.80e-247

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Taxonomy

Pseudopedobacter saltans → Pseudopedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 3147
ATGTTGCTATTGCTCCTTTTCTGCCTGGCGCAGCGCGGCCTCACCCAGGCGCAGTCATTGACGATCACTGGTACAGTGGCCGATGGCAAGGGCGCTCCTTTACAAAAAGCCACCGTCCGGAGCCTCGACGGCAAAGCTTCTGCCGTTACAGATGGCAGAGGTAGATTTGAGATCACGCTGAGATCCCCGAAGTCCACGCTGGAAGTCTCTATGATAGGCTATGAAACGCAACAGGTAGCTGTCCGCTCTGCCGACGGTCCTCTATCGATCACGCTGAAAGAAAAGCAAAGTCAGCTGGACGAAGTGGTGATTGTCGGCTATGGCAAGCAAAAGAAACGGGACCTCACGGGCTCCGTCGTATCTATTAAGGCCGAAGAGCTTGCCAAAACCAATCCCGTCACCCTGGAGCAGGGTATACAAGGCCGGGCCGCCGGGGTTTTCGTCACGCAGACCGATGGTGCACCCGGCGCCGGCATGAGCATCCAGATCCGGGGCACCAATTCCTTCCTGGGAGGAACCGAGCCGCTGTATGTCATCGATGGCGTTCCCATGGAGGCGGATAATGCCGGCTCAACACCCACGTCCGGCTCTTCCTATTCGCAGGGAAAGATGAACACCTTGTCTTTTCTCAACCCCAGCGATATCGAATCCATCGAAATATTGAAAGACGCGTCCGCAACAGCCATCTATGGTTCCCGGGGCGCTAACGGTGTGGTCATCATCACCACCAAAAAAGGCGCCCTCAACCAGGATCGCATCGATTTCAATGTAGTGACCAGCGCTTCCGAGATCACGAAAAAATATAAGCTCCTGAATGCTGAACAGTTCGCCAACTACCAGAACGAAGCTTACATCAATTCCGACACTTACCTGGGCACCAATTACCAGGCCACACAAACCATTCCCTACCCGGGCCGGTATGATTCCGTGCAAAAGAAATATCTGAAGGGTCCGGCAGACTATCGGGGGAAAGGCACCAACTGGCAGGATATCCTGTTCCAGACCGCTCCGAAGCAGGACTATACCGTCACTTTCTCCGGCGGCGCCAACAAGAACACATACCTCATCAGCGGCAGCCTGTTGGATCAGTCGGGCATCGTCATCAATTCGAAGTTCCGCCGGTATAGCATTCGCGCCAACGTGGACCGCAGCGTGAAGAGCTGGCTCCAGGTTGGAACATCCTTCAATTATTCCAATACCATCAATCAAATGGTCACCACGGGGGCCAGCATCGTAGGGCCGGAGGGCGGCGTCATCAAATCCGCACTTACTTTCCTGCCTACTGTCGCACTCGTCGATTCCACGACGGGCCTTTTCAGCCAGCTGTTCTATACTTCCAATCCCTACCAGTATGCCAAACAGGCGCTGGACAAGGTTACAGGAACCCGCCTTTTCAATTCATCCTACATCGAGGCGTCGCTGATGATCGGCCTTAAATTCAGAAGCGTGCTGGGCTGGAACGTAGCAGCCGACAGGAGAGACCAGTATTATCCCAGCACGATCAATGAGGGCAGCGCCTCCAAAGGCCGTGCATACGTTTCCACTACCAACAGCAGCAACGTAAGCTCGGAGAACTATTTCACCTACGATAAAAAATGGGGCATCCATTCGCTGAACGCCACGGCCGGCATCTCCTATAACAACGGTATCTGGCAGTATCAGACAGATGGCGTCAGCGGCTTCATGAACGATGCCCTTCAGAACAATAGCCTCGGGACGGCAGCTACCTATCTGCCCCCCACCAGCGGCAAGTCCGATTGGCGCCTGGTCTCTTACTACGGCAGGATCAATTATATCCTCAGCGATAAATACCTTTTCACGGTGACCTACCGCCGCGACGGCTCCAGTAAATTCGCTGCCAATAACAAATGGGCGGGATTCACTTCCGGCGCCTTCGCCTGGCGCCTTTCCAGGGAGGACTTCTTACAGCACGTCCAATGGCTCAGTGACCTGAAAGCACGCATCAGCATCGGCCAGTCCGGCAACCAGGGCATCGGCTCCTACAGCTCTCTCTCCCAGATAGCTGCCACTAATTACCCCTATGGCGGGACGGTCAGCAACGGTTACGTCGTTTCCTACCTGGGCAATGACAAGCTGAAATGGGAGACCACCAGGCAGTTGGACGGCGGCCTTGACATCGGCCTGCTGAAAGACCGGGTGACGATCGTCCTGGACTATTATCATAAAAAGACTTCCGACCTTCTGCAATATGTCACACTGCCTACCAGCACGGGTTTTTCCTCTCAGCTGATGAATATGGGGACCGTCGAGAACAGGGGGTTCGAAGCCGCCGTCAATGTTAAGATCGTAGATCACAAAGACTTCGGATGGAACATCGGCGCCAATATATCTACTAACCGTAACAAGATCCTGAGCCTGGGCGGCGTCAAGGAGCAATGGGTGCAGACAATCGGGACTGAACCTGTCAACTACCAGCCCTTTGTGCAGCGCATCGGCCAGCCCATTGGCATCATCATGGGCTGGAAGGAGAACGGTATCTACCAAAGCGAGAAGGAAGTGCGGGATAGCAAGTTCTTCGACGGTCAGCCTGATGCGGTCATCAAACGCATGGTAGGGGAGATCCGCTATAAGGACATGGACACCAGCGGCGTTATCGATGATAATGACCGGACTGTCATAGGCAACGTAAACCCGGACTACTACTACGGCTTCACGACAAATTTCACCTACAGGCATTTTGATCTCAGCCTCTTCTTCCAGGGAGTGCAGGGCGGCAATATCATCAATACCCTGAAGTACGTAACGGACAACCAGGGCAGCTATTCCAACACCACCGTAGACGCTTACAATAAGCGGTGGACAGGACCGGGATCCAAAGGCACCAATCCCAAGGATATCCTTAACTCCTGGAGAAGCCTGCGTTTCTCTGACCGGTATGTGGAGGACGGATCTTACCTGCGATTGAAGAACATCAACCTGGGCTATACTTTCGAGCTGAAGAACCGGGAGATCATCAGGAGCCTCCGGGTCTTCGCCAGCCTGAACAATGTTTTTACGATCACGCATTACAGCGGATATGACCCCGAGGTCAATGGCTTTGGCCAGGACCCTTCCCGCAGAGGGGTAGACCTGGGTAACTACCCCACGTCAAGGACCTATTCTTTCGGCGTCAACTGTTCGTTCTAA
PROTEIN sequence
Length: 1049
MLLLLLFCLAQRGLTQAQSLTITGTVADGKGAPLQKATVRSLDGKASAVTDGRGRFEITLRSPKSTLEVSMIGYETQQVAVRSADGPLSITLKEKQSQLDEVVIVGYGKQKKRDLTGSVVSIKAEELAKTNPVTLEQGIQGRAAGVFVTQTDGAPGAGMSIQIRGTNSFLGGTEPLYVIDGVPMEADNAGSTPTSGSSYSQGKMNTLSFLNPSDIESIEILKDASATAIYGSRGANGVVIITTKKGALNQDRIDFNVVTSASEITKKYKLLNAEQFANYQNEAYINSDTYLGTNYQATQTIPYPGRYDSVQKKYLKGPADYRGKGTNWQDILFQTAPKQDYTVTFSGGANKNTYLISGSLLDQSGIVINSKFRRYSIRANVDRSVKSWLQVGTSFNYSNTINQMVTTGASIVGPEGGVIKSALTFLPTVALVDSTTGLFSQLFYTSNPYQYAKQALDKVTGTRLFNSSYIEASLMIGLKFRSVLGWNVAADRRDQYYPSTINEGSASKGRAYVSTTNSSNVSSENYFTYDKKWGIHSLNATAGISYNNGIWQYQTDGVSGFMNDALQNNSLGTAATYLPPTSGKSDWRLVSYYGRINYILSDKYLFTVTYRRDGSSKFAANNKWAGFTSGAFAWRLSREDFLQHVQWLSDLKARISIGQSGNQGIGSYSSLSQIAATNYPYGGTVSNGYVVSYLGNDKLKWETTRQLDGGLDIGLLKDRVTIVLDYYHKKTSDLLQYVTLPTSTGFSSQLMNMGTVENRGFEAAVNVKIVDHKDFGWNIGANISTNRNKILSLGGVKEQWVQTIGTEPVNYQPFVQRIGQPIGIIMGWKENGIYQSEKEVRDSKFFDGQPDAVIKRMVGEIRYKDMDTSGVIDDNDRTVIGNVNPDYYYGFTTNFTYRHFDLSLFFQGVQGGNIINTLKYVTDNQGSYSNTTVDAYNKRWTGPGSKGTNPKDILNSWRSLRFSDRYVEDGSYLRLKNINLGYTFELKNREIIRSLRVFASLNNVFTITHYSGYDPEVNGFGQDPSRRGVDLGNYPTSRTYSFGVNCSF*