ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_5879

Search features with annotation key words

Displaying items 31-60 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_5879_31
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34266..35120
DNA (855bp) protein (285aa)
ABC transporter, permease protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0L4_9CLOT
binding--dependent transport system inner membrane component family protein
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AJZ61972.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
berkeley_reactor_200306_biofilm_scaffold_5879_32
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35130..35960
DNA (831bp) protein (277aa)
ABC transporter ATP-binding protein n=1 Tax=Desulfovibrio oxyclinae RepID=UPI00036209D1
ABC transporter family protein
ABC transporter family protein {ECO:0000313|EMBL:AJZ64032.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
berkeley_reactor_200306_biofilm_scaffold_5879_33
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35957..36817
DNA (861bp) protein (287aa)
ABC transporter, permease protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0L6_9CLOT
binding--dependent transport system inner membrane component family protein
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AJZ63009.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
berkeley_reactor_200306_biofilm_scaffold_5879_34
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

36822..38213
DNA (1392bp) protein (464aa)
Amidase id=4334335 bin=GWF2_Methylomirabilis_70_14 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase
Tax=GWA2_Rokubacteria_70_23_curated
berkeley_reactor_200306_biofilm_scaffold_5879_35
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38195..38944
DNA (750bp) protein (250aa)
Asp/Glu/hydantoin racemase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF9_RALPI
Asp/Glu/hydantoin racemase
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:AGW91836.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
berkeley_reactor_200306_biofilm_scaffold_5879_36
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38948..40108)
DNA (1161bp) protein (387aa)
Oxidoreductase n=3 Tax=Amycolatopsis mediterranei RepID=G0FML4_AMYMS
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:AEK43159.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
berkeley_reactor_200306_biofilm_scaffold_5879_37
unknown

Not on your lists

comp(40272..40535)
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_5879_38
unknown

Not on your lists

comp(40545..42215)
DNA (1671bp) protein (557aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_5879_39
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42203..43408)
DNA (1206bp) protein (402aa)
Peptidase S16 lon domain protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VCC4_9CYAN
Strain MEJ076 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIP98351.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
peptidase S16 lon domain protein
berkeley_reactor_200306_biofilm_scaffold_5879_40
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43646..43936
DNA (291bp) protein (97aa)
Bacterial aa3 type cytochrome c oxidase subunit IV {ECO:0000313|EMBL:KFC66522.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
berkeley_reactor_200306_biofilm_scaffold_5879_41
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44168..44476
DNA (309bp) protein (103aa)
UPI0003CDE756 related cluster n=1 Tax=unknown RepID=UPI0003CDE756
Transcriptional regulator {ECO:0000313|EMBL:ESY67894.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_5879_42
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44526..45383)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GAA9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL26725.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_5879_43
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45488..46399
DNA (912bp) protein (304aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J3A506_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:EJL26726.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_5879_44
actinobacterium acAMD-2, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(46406..47494)
DNA (1089bp) protein (363aa)
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255B604
Uncharacterized protein {ECO:0000313|EMBL:KGA12363.1}; TaxID=1504318 species="Bacteria; Actinobacteria.;" source="actinobacterium acAMD-2.;"
vitamin-B12 independent methionine synthase
berkeley_reactor_200306_biofilm_scaffold_5879_45
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47491..48558)
DNA (1068bp) protein (356aa)
Aromatic amino acid beta-eliminating lyase/threonine aldolase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWZ4_PARL1
aromatic amino acid beta-eliminating lyase/threonine aldolase
Aromatic amino acid beta-eliminating lyase/threonine aldolase {ECO:0000313|EMBL:ABS64427.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
berkeley_reactor_200306_biofilm_scaffold_5879_46
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48569..49324)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJT7_TISMK
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
berkeley_reactor_200306_biofilm_scaffold_5879_47
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49321..50148)
DNA (828bp) protein (276aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHU6_9PROT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH13127.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
glutamine ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_5879_48
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50135..50806)
DNA (672bp) protein (224aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHU5_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH13126.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
polar amino acid ABC transporter, inner membrane subunit
berkeley_reactor_200306_biofilm_scaffold_5879_49
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50809..51477)
DNA (669bp) protein (223aa)
ABC transporter, permease protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHU4_9PROT
ABC transporter, permease protein {ECO:0000313|EMBL:EFH13125.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
amino acid ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_5879_50
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51499..52383)
DNA (885bp) protein (295aa)
Tat pathway signal sequence domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A3E0_9PROT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM31531.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
amino acid ABC transporter
berkeley_reactor_200306_biofilm_scaffold_5879_51
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52445..53269
DNA (825bp) protein (275aa)
Phophonate C-P lyase system transcriptional regulator PhnF, GntR family n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LNP5_DESBD
GntR family transcriptional regulator
Phophonate C-P lyase system transcriptional regulator PhnF, GntR family {ECO:0000313|EMBL:ACU88930.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
berkeley_reactor_200306_biofilm_scaffold_5879_52
Serratia sp. ATCC 39006, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53298..53681)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Serratia sp. ATCC 39006 RepID=V3T943_9ENTR
transcriptional regulator, HxlR family
Uncharacterized protein {ECO:0000313|EMBL:ESN64973.1}; TaxID=104623 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. ATCC 39006.;"
berkeley_reactor_200306_biofilm_scaffold_5879_53
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53781..54899
DNA (1119bp) protein (373aa)
FMN oxidoreductase {ECO:0000313|EMBL:KFC77325.1}; EC=1.-.-.- {ECO:0000313|EMBL:KFC77325.1};; TaxID=910964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
Oxidoreductase, FAD/FMN dependent n=3 Tax=Pseudomonas RepID=I2BPG9_PSEFL
oxidoreductase, FAD/FMN dependent
berkeley_reactor_200306_biofilm_scaffold_5879_54
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54917..55324)
DNA (408bp) protein (136aa)
Transcriptional regulator, MerR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7U6_STAND
MerR family transcriptional regulator {ECO:0000313|EMBL:KGM33547.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
MerR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_5879_55
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55398..56222
DNA (825bp) protein (275aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7U7_STAND
Short-chain dehydrogenase {ECO:0000313|EMBL:KGM33548.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_5879_56
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56316..57590
DNA (1275bp) protein (425aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QET0_GLUHA
Uncharacterized protein {ECO:0000313|EMBL:KGM32811.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_5879_57
unknown

Not on your lists

comp(57580..57912)
DNA (333bp) protein (111aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_5879_58
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58061..58465
DNA (405bp) protein (135aa)
aldehyde-activating protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003614D15
Aldehyde-activating protein {ECO:0000313|EMBL:KGM31635.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
glutathione-dependent formaldehyde-activating enzyme
berkeley_reactor_200306_biofilm_scaffold_5879_59
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58474..59337)
DNA (864bp) protein (288aa)
Transglutaminase-like enzyme, predicted cysteine protease n=1 Tax=Rhizobium sp. CF142 RepID=J2L4J1_9RHIZ
Transglutaminase {ECO:0000313|EMBL:KKB11433.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transglutaminase
berkeley_reactor_200306_biofilm_scaffold_5879_60
unknown

Not on your lists

comp(59348..59479)
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying items 31-60 of 127 in total

View Taxonomy