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berkeley_reactor_200306_biofilm_scaffold_12839

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Displaying items 61-75 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_12839_61
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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56659..57420
DNA (762bp) protein (254aa)
Transcriptional regulator, GntR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VDA3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA04202.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
phosphonate C-P lyase system transcriptional regulator PhnF
berkeley_reactor_200306_biofilm_scaffold_12839_62
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57445..58329)
DNA (885bp) protein (295aa)
DMT superfamily inner membrane transporter protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S2K3_RHIET
DMT superfamily inner membrane transporter protein
DMT superfamily inner membrane transporter protein {ECO:0000313|EMBL:AGS21616.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
berkeley_reactor_200306_biofilm_scaffold_12839_63
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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58593..59480
DNA (888bp) protein (296aa)
Methyltransferase domain protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CP35_9RHIZ
Methyltransferase {ECO:0000313|EMBL:KAI95418.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
protein-L-isoaspartate(D-aspartate) O-methyltransferase
berkeley_reactor_200306_biofilm_scaffold_12839_64
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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59596..60402
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000365B318
IclR family transcriptional regulator {ECO:0000313|EMBL:KEC78958.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
putative IclR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_12839_65
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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60707..61483
DNA (777bp) protein (259aa)
Probable dehydrogenase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q987C7_RHILO
dehydrogenase
Probable dehydrogenase {ECO:0000313|EMBL:BAB53276.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_12839_66
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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61515..62840
DNA (1326bp) protein (442aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Histidinol dehydrogenase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3THN8_TISMK
histidinol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_12839_67
unknown

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comp(62774..63001)
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_12839_68
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(63064..63789)
DNA (726bp) protein (242aa)
UPI0003CFAC3A related cluster n=1 Tax=unknown RepID=UPI0003CFAC3A
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ19210.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_12839_69
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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63897..64907
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQD3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX44412.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
NMT1/THI5 like domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_12839_70
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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64891..65733
DNA (843bp) protein (281aa)
ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FSU8_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:ESX82854.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
binding-protein-dependent transport system inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_12839_71
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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65730..66524
DNA (795bp) protein (265aa)
Putative ATP-binding protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1I3N4_PSEUO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETM64876.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
taurine-transporting ATPase
berkeley_reactor_200306_biofilm_scaffold_12839_72
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66583..67935
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031DAA4F
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIM26954.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
major facilitator superfamily transporter
berkeley_reactor_200306_biofilm_scaffold_12839_73
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68746..69606)
DNA (861bp) protein (287aa)
Esterase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TJT1_MESCW
esterase
Esterase {ECO:0000313|EMBL:ADV14942.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_12839_74
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(69636..71651)
DNA (2016bp) protein (672aa)
Fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FCH1_9RHIZ
Fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components {ECO:0000313|EMBL:CCV13868.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
transport system permease
berkeley_reactor_200306_biofilm_scaffold_12839_75
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71644..72513)
DNA (870bp) protein (290aa)
Iron-hydroxamate transporter subunit periplasmic-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FL52_9RHIZ
Iron-hydroxamate transporter subunit periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CCV13869.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
periplasmic binding protein
Displaying items 61-75 of 75 in total

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