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berkeley_reactor_200306_biofilm_scaffold_12839_61

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 56659..57420

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, GntR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VDA3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 42.0
  • Coverage: 243.0
  • Bit_score: 190
  • Evalue 1.30e-45
Uncharacterized protein {ECO:0000313|EMBL:KEA04202.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.6
  • Coverage: 231.0
  • Bit_score: 339
  • Evalue 2.40e-90
phosphonate C-P lyase system transcriptional regulator PhnF similarity KEGG
DB: KEGG
  • Identity: 42.2
  • Coverage: 237.0
  • Bit_score: 183
  • Evalue 7.60e-44

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 762
ATGACACCAGCCGGCGATCGGACGAAGGCAGCCGTGACGCGCGACGGCGCCGGCCCGCTCTGGCAGCAGGTCGCGGCCTCGATTCACGCCCGGATCCTGGCCGGCGAATACGGACCGGGCGCGCAGCTGCCGCCCGACCGGCAGATCGCCGCCGACTACGGCACCAGCCGCATGACCGTGCGCCAGGCCCTGGCCGCGCTGGAGAAGAAGGGCGCCATCCGCATCGAGCACGGCAACGGCACCTTCGTCAGCGAGGACCCGATGCCCTACGCCATCGGCAGGCGGGTGCGGTTCGACGAGAACCTGAGGAGCGCGGAGCTGTCGCCGGAGCGGCGCCTGCTCCGCTGGCGGCTGGCCGAGGCCGCCCCCGACATCGCCGCGGCGCTGGCCCTGCCCCGGCAAGCGCCCGTGATCGAGATGACGATAGGCGCCTTCGCCGACGCGCGCCCGATCGCCATCGGCGTCCACGCCTGCTGCGCGACCCGCTTCGCCGGCTTTGCCGAGGCGTTCGAGCAGGACCGCTCCTTCTCCAGGGCGCTCCGGCGCTACGGCGTCGAGGACTATCTGCGCAAGACCACGGAGATCACCGCGCGGATGCCGACGGCTGAGGAAGCCAAGGTCCTGCGCCAGGCGCGGACGGTGCCGGTCCTGGCCTACACCGCGCTCGACATCGACCTCGCCGGCGTTCCGATCTCCTATTTCGTCGGCTGCTTTGCCGCCGAGCGCGTCAAGATCGTCGTCGACCTGCCCGCCGGAGCCTGA
PROTEIN sequence
Length: 254
MTPAGDRTKAAVTRDGAGPLWQQVAASIHARILAGEYGPGAQLPPDRQIAADYGTSRMTVRQALAALEKKGAIRIEHGNGTFVSEDPMPYAIGRRVRFDENLRSAELSPERRLLRWRLAEAAPDIAAALALPRQAPVIEMTIGAFADARPIAIGVHACCATRFAGFAEAFEQDRSFSRALRRYGVEDYLRKTTEITARMPTAEEAKVLRQARTVPVLAYTALDIDLAGVPISYFVGCFAAERVKIVVDLPAGA*