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berkeley_reactor_200306_biofilm_scaffold_22810_63

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(67056..68051)

Top 3 Functional Annotations

Value Algorithm Source
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:KJL28813.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.9
  • Coverage: 330.0
  • Bit_score: 286
  • Evalue 4.10e-74
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components id=7720689 bin=CNBR_ACT species=Microbacterium testaceum genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 44.7
  • Coverage: 309.0
  • Bit_score: 278
  • Evalue 4.70e-72
ribose/xylose/arabinose/galactoside ABC transporters, permease components similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 304.0
  • Bit_score: 258
  • Evalue 1.40e-66

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Taxonomy

Microbacterium oxydans → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 996
ATGCCTGAGCAGGTCACGGCCGCAGCCTTGCCTTCGCAAGGACGGCTCTCCGCTCTCATCCTGCGGCAGGAGACGACGCTGGTCGCCGTCATCCTGGCCGTCGCCATCGGCGCCTCGCTGCGCAATCCGGCATTCCTGGACCCGGCCAATCTGACCGACATCGCCCGCGCGGCGGTGATCTATTTCATCATGGGCTGCGGCGCCTCGCTCCTGATGATCGGCGGCGGCCTGGATTTCTCCGTGGGGGCGGTCTTCACGCTCGGCGGCATCGTCTGCGCTTCCCTGCTGAGCTGGGAGCTGCCCTGGCCGATCGCAGTCCTGGCGGGCGTCGGCGCGGGCGCCGCGGCCGGGTTCGTCAACAGCGTCATCATCGAGCGGCTGCACGTTCCCCCGATCATCGCGACGCTGGGCACCTTCTTCATCATTGGCGGCCTGTGCGTCGAGATCACCGGCGGGCAGGACATCGTGCCCCTGCCGGACGCGTTCCAGGCCCTCGGCCAGGGATCGCTGCTCGGCGTGCCGTACATCATCCTCTACGCCGTCGCGACAGGATTGCTGTTCTCGTTCCTGCTGGAGCAGACACCGTTCGGCGTCGAGACACGCGCCCTCGGCGGCAATCGCAAGGCGGCGATCGCCAACGGACTGAAGGTCAAGCGGCTCGACACGATCCTCTATGTCGCCGCAGGCGCGACCGCCGGGCTCGCCGGCGTCATCTACGCCGCGAGGGTCGGCAGCGGCCAGGTGGCTGCCGGAGGCTCCTCCGTGACCCTGACGGTCGTCACCGCAACGCTGATCGGCGGCATCAGCCTCCTCGGAGGGCTGGGAACGATATCGGGCGTCGCCACCGGCGCCCTTCTCCTGTCGGCGATCGACAACGCCCTCATCGTCGCCAGCGTGCCGCCGCAGTACAACAGCATCATCGTCGGAGCGATCCTCATCTGCGCGGTGGCGGTCGACCACCTGCGCCGGCAGCGCTTGTACCGGGTGCGCCGGTGA
PROTEIN sequence
Length: 332
MPEQVTAAALPSQGRLSALILRQETTLVAVILAVAIGASLRNPAFLDPANLTDIARAAVIYFIMGCGASLLMIGGGLDFSVGAVFTLGGIVCASLLSWELPWPIAVLAGVGAGAAAGFVNSVIIERLHVPPIIATLGTFFIIGGLCVEITGGQDIVPLPDAFQALGQGSLLGVPYIILYAVATGLLFSFLLEQTPFGVETRALGGNRKAAIANGLKVKRLDTILYVAAGATAGLAGVIYAARVGSGQVAAGGSSVTLTVVTATLIGGISLLGGLGTISGVATGALLLSAIDNALIVASVPPQYNSIIVGAILICAVAVDHLRRQRLYRVRR*