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berkeley_reactor_200306_biofilm_scaffold_22810_76

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 80261..81163

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Rhizobium radiobacter RepID=UPI00037DBD5D similarity UNIREF
DB: UNIREF100
  • Identity: 80.2
  • Coverage: 298.0
  • Bit_score: 490
  • Evalue 1.20e-135
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF67045.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.5
  • Coverage: 298.0
  • Bit_score: 499
  • Evalue 2.10e-138
Putative HTH-type transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 80.6
  • Coverage: 294.0
  • Bit_score: 481
  • Evalue 1.20e-133

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Taxonomy

Rhizobium nepotum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 903
TTGGACCGTATCGACCTCTTCCGCATCTTCACCCGCGTCGTCGAAGCGGCGAGCTTCACCCGCGCCGCGGACACGCTGGGCTTGCCGCGCTCTTCGGTCTCGGCGGCGGTGATCGAGCTGGAAGGCCGGGTCGGCGCGCGCCTCCTGCACCGCACGACGCGCAAGGTCTCTCCGACCCAGGACGGCGTCGCCTTCTACGAGCGCTGCCGGAGGGTGGTCGCCGACGTTGAGGAAACGGAGGGCCTGTTCCGGCAGAGCGGTGCAAAGCCTTCGGGCAAGCTGCGGATCGACGTGCCCGGCCGGATCGGCCGGCTCATCGTCGCGCCAGCCCTGCCGGCCTTCCTCGACGAGTTTCCGGGAATCGACATCGACCTCGGGGTGACGGACAGGGCCGTCGATCTGATCGAGGACAGCGTCGATTGCGTGCTGCGGGTCGGTTCCCTGAACGATTCGAGGCTGATCGCTCGGCCGATCGGCAAATTGCCGCTCATCAACGTCGCCAGCCCCGACTATCTCCTGCGGCACGGCACACCTCGAACGCCGGACGACCTGAGCGAGCACTGGGCCGTGAACTACGCCTCGCCGTCGACGGGACGGGTCGAGCCCTGGGAATGGACGGACGGCGACACGTCGCGCGGCCGGCCGATGCGCGGGCGCGTCACCGTCAACAGCGCAGAAGCCTATATCGCCTGCTGCCTCGCGGGGCTGGGCCTCATCCAGATTCCGGCCTACGACGTGCGCGTCCATCTCCTGGCCGGCGAACTCGTCGAGGTCATGCCGGATCATCGTGCCGAACCGCTGCCGATGACGCTCCTGTACCCGCACCGCCAGCATCTCTCCCGCCGGGTCCAGGTGTTCGCGGCCTGGCTGGAGGGCCTGTTGACGAAGGCCGTCGCGGGGTAG
PROTEIN sequence
Length: 301
LDRIDLFRIFTRVVEAASFTRAADTLGLPRSSVSAAVIELEGRVGARLLHRTTRKVSPTQDGVAFYERCRRVVADVEETEGLFRQSGAKPSGKLRIDVPGRIGRLIVAPALPAFLDEFPGIDIDLGVTDRAVDLIEDSVDCVLRVGSLNDSRLIARPIGKLPLINVASPDYLLRHGTPRTPDDLSEHWAVNYASPSTGRVEPWEWTDGDTSRGRPMRGRVTVNSAEAYIACCLAGLGLIQIPAYDVRVHLLAGELVEVMPDHRAEPLPMTLLYPHRQHLSRRVQVFAAWLEGLLTKAVAG*