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berkeley_reactor_200306_biofilm_scaffold_20018_28

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 21230..21910

Top 3 Functional Annotations

Value Algorithm Source
Nopaline transport system permease protein NocM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG32_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 69.8
  • Coverage: 225.0
  • Bit_score: 322
  • Evalue 3.30e-85
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR83795.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.8
  • Coverage: 225.0
  • Bit_score: 322
  • Evalue 4.60e-85
polar amino acid ABC transporter, inner membrane subunit similarity KEGG
DB: KEGG
  • Identity: 70.7
  • Coverage: 225.0
  • Bit_score: 311
  • Evalue 1.60e-82

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 681
ATGAACTGGTCGATCATCGCCGACAATGCCCCGCTCTATCTCCAGGGCACCGGCCTCACCATCGGCCTGACGCTGGCTTCGCTCGCCCTCGGCTTCACGCTGTCGCTCGGCCTCGCCCTGGCGCGCAACGCCGCCTCGGCCTGGATCCGCCTGCCGGTCGCCGGCTACACGCTGGTCTTCCGCGGCACGCCGCTCCTGGTGCAGCTCTTCCTGATCTATTTCGGCCTGGCGCAGTTCGACCTCCTGCGCAAGAGCTTCCTCTGGCCCTGGCTGTCGAGCCCGCTCGTCTGCGTGCTCCTGACCTTCGTGCTCAACACCACGGCCTACACCACCGAGATCTTCGCCGGCGGCCTGCGCCACCTGCCGCTGGGCGAGGTCGAGGCGGCGCGCGCCTACGGCCTGTCGCCCTTCACCGTGGCGCGGCGCATCCTGCTGCCGGCCATGCTGACGCGCTCGCTGCAGCTCTACGGCAACGAGGCGATCATGCTGATGCACGCCACCTCGCTCGCCAGCACGGTGACGCTGATGGAGGTGACGGGCGTCGCCCGCACCATCACCCTCACCTCCTACATCCTGTTCGAGCCCTATGTGACGGCGGCGGCGATCTACCTCGGGCTCACCTTCGTCCTCGTCGCCCTGTTCCGCGCGGCGGAGCGGCGCTGGGCCGGCTATCTAGTCTGA
PROTEIN sequence
Length: 227
MNWSIIADNAPLYLQGTGLTIGLTLASLALGFTLSLGLALARNAASAWIRLPVAGYTLVFRGTPLLVQLFLIYFGLAQFDLLRKSFLWPWLSSPLVCVLLTFVLNTTAYTTEIFAGGLRHLPLGEVEAARAYGLSPFTVARRILLPAMLTRSLQLYGNEAIMLMHATSLASTVTLMEVTGVARTITLTSYILFEPYVTAAAIYLGLTFVLVALFRAAERRWAGYLV*