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berkeley_reactor_200306_biofilm_scaffold_24940_18

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(18152..18724)

Top 3 Functional Annotations

Value Algorithm Source
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.9
  • Coverage: 169.0
  • Bit_score: 265
  • Evalue 3.30e-68
def; peptide deformylase (EC:3.5.1.88) similarity KEGG
DB: KEGG
  • Identity: 77.5
  • Coverage: 169.0
  • Bit_score: 264
  • Evalue 1.90e-68
Peptide deformylase n=1 Tax=Rhizobium sp. RepID=L0NBS5_RHISP similarity UNIREF
DB: UNIREF100
  • Identity: 76.9
  • Coverage: 169.0
  • Bit_score: 265
  • Evalue 2.40e-68

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Taxonomy

Rhizobium sp. → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGGCCCTGCGACCGATCATCATCCTGCCCGACCCGAAACTGCGCCTCAAGTCCGCGCCGGTCGAGCGCGTCGACGGCGAGCTCGTCGCCCTCGCCGACGACATGCTCCAGACCATGTACGACGCGCCCGGAATCGGTCTTGCCGCCATCCAGGTCGGCGTGCCGCGCCGCCTCCTGGTGATCGACGTCAGCCGCCCCGAGGAGGAGCGCGCGCCGCAGGTCTTCATCAATCCCAGCATCGTCTGGTCGTCCGAGGAGCGCTCGGTCTATGACGAGGGCTGCCTGTCGATCCCCGACTATTATGCCGAGGTCGAGCGTCCGGCCCGCGTCCGGGTCGCCTATGTCGATCGTGCCGGCAAGGCGCAGGACCTGGAGGCCGACGGCCTGCTCGCCACCTGCCTGCAGCACGAGATCGACCATCTCGACGGCGTGCTGTTCATCGACCACATCTCCAAGCTCAAGCGCGGCATGGTGATCCGCAAGTTCACCAAGGCCGCCAAGCAGCGGGAGGCCGACGGCGAGGCGGACCGGTCGGCGGCCAAGGCGCGGCCGGCGCCGCGTGCGGTGGAGTGA
PROTEIN sequence
Length: 191
MALRPIIILPDPKLRLKSAPVERVDGELVALADDMLQTMYDAPGIGLAAIQVGVPRRLLVIDVSRPEEERAPQVFINPSIVWSSEERSVYDEGCLSIPDYYAEVERPARVRVAYVDRAGKAQDLEADGLLATCLQHEIDHLDGVLFIDHISKLKRGMVIRKFTKAAKQREADGEADRSAAKARPAPRAVE*