ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_27699_5

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(3285..4313)

Top 3 Functional Annotations

Value Algorithm Source
Putrescine-binding periplasmic protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3X3_AGRVS similarity UNIREF
DB: UNIREF100
  • Identity: 72.9
  • Coverage: 343.0
  • Bit_score: 518
  • Evalue 2.80e-144
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.0
  • Coverage: 342.0
  • Bit_score: 528
  • Evalue 6.40e-147
potF; ABC transporter substrate binding protein (putrescine) similarity KEGG
DB: KEGG
  • Identity: 72.9
  • Coverage: 343.0
  • Bit_score: 518
  • Evalue 7.90e-145

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1029
ATGCCGACCTGCAAAGCCCTCTTCGTCGCCGCGGCGCTCGCCGCGATCCCGCCCGGCGCCGGCGCGGCCGAGCTGCACATCTACGCCTGGTCGAGCGAGATCCCGCAGGAGATCGTCGACGACTTCGCCAAGGCGACCGGCATCGAGGTGACGCTCGACACCTTCGATTCCAACGAGACCATGATGGCCAAGCTCAGCGCCGGGGCCTCGGGCTACGACCTGGTCGAGCCGAGCCAATATGCGGTGCAGGTCCTGGCCAAGCAGGGGCTGCTCACCGAGCTCGACCATGCCAAGCTGCCCAACCTCGCCAATCTCGGCGCCGCCTTCCGCTCCGTCAGCTACGATCCCGGCCAGAAGGTGAGCGTGCCCTATGTCTGGGGCACCACCGGGCTCGCCTACAACGAGGACTGCGTCAAGACGCCGGTGACGAGCTGGAAGGCGCTGTGGGACCCCGCCTACAAGGGGCGGATCTACATGCTCGACAACATGCTGTCGGCCTATATCGCCGCCCTGCAGCTCAACGGCTTCCATGCCGGCACCAAGGATCCGGCCGAGGTCGAGACGGCCACCAAGGCGCTGGTCGCGCAGAAGGACGTGCTCGGCGGCTACAACAGCTCCAACTTCGCCGATCTCGTCGCCTCGGGCGAGGCCTGCCTGGTGCAGGCCTACAATTCCAATATCGCGCAGGTCATCGCCGCCAACCCAAAGGTCCACTACGTCATCCCGTCCGAGGGCGGCACGATGTGGATCGACGGCTTCGCCATCCCCAAGAGCGCCGCGAACGCGGATGCGGCCTACAGGTTCATCGACTATCTCCTGCAGCCGGCGGTCGCCGCCAAGGCGGCCGATCTCAGCAAGGCGGCCACGGTGGTCGACGCGGCCAAGGCGATGCTGCCGAAGGCGGTGGCCGAGAACCCGGCGATCTATCCGCCGGCCGACGCGCTGACCAAGGTCGACTTCATCCTCGACATCGGCGAGGCCACGAAGCTCTACCAGGACGGCTGGACCAGGGTGAAGACGGCACAATGA
PROTEIN sequence
Length: 343
MPTCKALFVAAALAAIPPGAGAAELHIYAWSSEIPQEIVDDFAKATGIEVTLDTFDSNETMMAKLSAGASGYDLVEPSQYAVQVLAKQGLLTELDHAKLPNLANLGAAFRSVSYDPGQKVSVPYVWGTTGLAYNEDCVKTPVTSWKALWDPAYKGRIYMLDNMLSAYIAALQLNGFHAGTKDPAEVETATKALVAQKDVLGGYNSSNFADLVASGEACLVQAYNSNIAQVIAANPKVHYVIPSEGGTMWIDGFAIPKSAANADAAYRFIDYLLQPAVAAKAADLSKAATVVDAAKAMLPKAVAENPAIYPPADALTKVDFILDIGEATKLYQDGWTRVKTAQ*