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berkeley_reactor_200306_biofilm_scaffold_34479_133

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 149322..150293

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002E661D1 similarity UNIREF
DB: UNIREF100
  • Identity: 45.8
  • Coverage: 299.0
  • Bit_score: 268
  • Evalue 6.20e-69
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 45.8
  • Coverage: 299.0
  • Bit_score: 267
  • Evalue 3.00e-69
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABO54884.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.8
  • Coverage: 299.0
  • Bit_score: 267
  • Evalue 1.50e-68

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Taxonomy

Burkholderia vietnamiensis → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 972
ATGGGCATTGCCGATCTCCGGTCCCTCGACGTCTCGCATCTGATGATCCTGCGTCAACTCTTGACGGACTGCAGCGTCACCCGGGTCGCCGAACGGCTCAACCTGCCCCAGCCCTCGGTCAGCCGGGTGCTGAAGCGCCTGCGCGGCGCCTTCTCCGATCCCCTCCTGGTGCGCAGCGGCTCGGGTTTCGTGCCGACCGAGCGCGGCATCGCGGTGCGGGAGGCGGTCGCCGACGTCCTGCAGCGGCTGGACGGGATCGCGGCGGCGAAGACGGCCTTCGTGCCGGCGCAGTCGACGCGCGTGTTCTCGGTCGCCTGTGCCGACTGCCTCGCCGTCGCCCTGGTGCCGCGCATCATCGCCGCGGTGGCCGCGGCCGGCCCCGGTCTGCGGGTCAAGTTCCGCTCCATCGATCCGGCCTTCGACGTGTTCGAGGCCCTGAAGGTCGGCGAGATCGACCTCGTCATCGACAACAGCCCGAGCCCGCCGGAAGGCCTGCGCCTGGCGCCGCTCTACGACGACGAGGTGGTGCTGATGATGCGGCGCGGGCATCCGGCCGCGACCGCCGGGCGCCCCTCCCTCGAGCATTACCTGACGCTGCAGCACCTGGCGCCGCATCCGAGCTCGCTGCGCGATGCCGGCCCGATCGACGGCGAGCTGGCGCGGGGTGGCTACCGGCGCATCATCCATGCGACCGTGCCCGAGTTCAACCTCGTGCCCTATGTGCTGGCCGAGACCGACCTCGTCTTCACCACCGGCCGCCGCTTCGCCGAGCATCACGCCCGGCACCTGCCGATCGAGGTGGTGCCGGCCCCGCCCTTCTTCCCGGCCATGCGCTTCCACCAGCTTTGGCACGACCGGACACATTACAGCCCGGCCATCCGCTGGCTCCGCTCCGTGGTGATGCGGGCGATCCGGGAGACCGATGCCGTCGGCCCGGTCGAGGCCGCCCAGCGCCGACGCGCCCTGGCATAA
PROTEIN sequence
Length: 324
MGIADLRSLDVSHLMILRQLLTDCSVTRVAERLNLPQPSVSRVLKRLRGAFSDPLLVRSGSGFVPTERGIAVREAVADVLQRLDGIAAAKTAFVPAQSTRVFSVACADCLAVALVPRIIAAVAAAGPGLRVKFRSIDPAFDVFEALKVGEIDLVIDNSPSPPEGLRLAPLYDDEVVLMMRRGHPAATAGRPSLEHYLTLQHLAPHPSSLRDAGPIDGELARGGYRRIIHATVPEFNLVPYVLAETDLVFTTGRRFAEHHARHLPIEVVPAPPFFPAMRFHQLWHDRTHYSPAIRWLRSVVMRAIRETDAVGPVEAAQRRRALA*