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berkeley_reactor_200306_biofilm_scaffold_44015_3

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 567..1271

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L3 n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035CA687 similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 235.0
  • Bit_score: 378
  • Evalue 4.00e-102
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.7
  • Coverage: 232.0
  • Bit_score: 374
  • Evalue 1.10e-100
rplC; 50S ribosomal protein L3 similarity KEGG
DB: KEGG
  • Identity: 77.4
  • Coverage: 235.0
  • Bit_score: 373
  • Evalue 3.70e-101

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Taxonomy

Roseibium sp. TrichSKD4 → Roseibium → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 705
ATGCGTTCAGGTGTCATCGCACAGAAGATCGGCATGAGCCGCGTCTACAACGACGCCGGCGAGCATGTCCCGGTCACGGTCCTCAAGCTGGATGGCTGCCAGGTCGTCGCTCACCGGACCGAAGACAAGAACGGCTACACGGCGCTGCAGCTCGGCGCCGGCCTGGCCAAGGTCAAGAACACGACGCGCGCCCAGCGCGGCCACTTCGCCGTGGCCCAGGTCGAGCCCAAGCGCAAGATCGTCGAGTTCCGCGTTCCCGAGACCGATCTCATCCCGGTCGGCGCGACGATCACGGCGGACCATTTCGTCCCCGGCCAGTTCGTCGACGTCACCGGCACCACGGTCGGCAAGGGCTTTGCCGGCTCGATGAAGCGCTGGAACTTCGGCGGCCACCGCGCCAGCCACGGCAACTCGGTCACGCATCGTGCCCATGGCTCGACCGGCCAGCGCCAGGACCCCGGCAAGACCTTCGCCGGCAAGAAGATGGCAGGCCATATGGGCGATGAGCGCGTCACCACCCTGAACCTCAAGGTCGTTCGCACCGATGTCGAGCGCGGCCTGATCCTGGTCGAAGGGGCCGTTCCCGGCTCCAAGGGCGGATGGATCACCATCCGCGATGCGGTCAAGAAGGCCTTGCCGGAAGCGGCGCCGAAGCCCGGCGCGTTCCGCTTGCCCGAAGCTGCGTCCGCAGCGGCCGGCGAGTGA
PROTEIN sequence
Length: 235
MRSGVIAQKIGMSRVYNDAGEHVPVTVLKLDGCQVVAHRTEDKNGYTALQLGAGLAKVKNTTRAQRGHFAVAQVEPKRKIVEFRVPETDLIPVGATITADHFVPGQFVDVTGTTVGKGFAGSMKRWNFGGHRASHGNSVTHRAHGSTGQRQDPGKTFAGKKMAGHMGDERVTTLNLKVVRTDVERGLILVEGAVPGSKGGWITIRDAVKKALPEAAPKPGAFRLPEAASAAAGE*