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berkeley_reactor_200306_biofilm_scaffold_53974_1

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 2..1072

Top 3 Functional Annotations

Value Algorithm Source
Type II and III secretion system protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR65_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 370.0
  • Bit_score: 347
  • Evalue 1.50e-92
Secretin {ECO:0000313|EMBL:KIZ45156.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.4
  • Coverage: 360.0
  • Bit_score: 349
  • Evalue 4.30e-93
type II and III secretion system protein similarity KEGG
DB: KEGG
  • Identity: 49.7
  • Coverage: 370.0
  • Bit_score: 347
  • Evalue 4.30e-93

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1071
CGCGACATCAGCCCGATCGCCCGGGCGATCCAGGAGGCGGTGCCCGGCAGCGAGATCGTGGTGCGCCAGCTCAACGAGGGCGTGCTGCTCAGCGGCTACGTCAATTCCGCCGACGATGCGTCGCGGGCGGTGGCCATCGCCTCCCAGTTCCTCGGCAAGGACGGCGCCGTCGCCAACTCCATCTCGATCCGCGCCCGCGAGCAGGTCATGCTGAAGGTGACGGTGGCCGAGGTGCAGCGCCAGATCCTCAAGCAGCTCGGCATCGACCTCGCCGGCGGCAACAACAGCGGAACCTTCACCTTCTCGACCTCCAATCCCTTCGGCCTCGCCGGGCCGATCGCCAGCAACACGGCCTCGATCGGCAATTCCAACTTCAATGCGACGATTCGGGCCTTCGAGCGCGCCAACGTGCTGCGCACCCTGGCCGAGCCGACGCTGACCGCCATCTCCGGCGAATCCGCCAAGTTCCTGGCCGGCGGCGAGTTCCCCATCCTGACCAGCTCGAGCTGCACGCCGGCGACCGCGGGCGGCGTGCCGATCTGCCAGACCGGCTACACCTACAAGCAGTTCGGCGTCGGGCTCACCTTCACGCCGGTGGTGCTGAACGAGGGCCGCATCAGCCTGAAGGTCGGCACCGAAGTCTCCGACATCGACAACAAGAACACCTTCACCACCACCGACGGCGCCGTGATCCCTGCCTTCACCGTGCGTCGCGCCGACACCACGGTCGAGCTCGCCTCCGGCGCCTCGCTTGTCATGGCCGGCATGATCCAGCAGAACACCAAGCAGGTGGTCAACGGCACGCCGGGGCTGATGAACATCCCGATCCTCGGCCAGCTCTTCCGCTCGCGTGACTACCAGCGCGACAACACCGAGCTGATGATCATGGTCACGCCCTATCTCGCCAAGGCGGTCGACCGCAAGGACATCGCCCTGCCGAGCGACGGCTTCACCGACGCCTCGGATCCCTCGACCTTCCTGCTCGGGCGCTTCAACAAGATCTACGGCGTGCGCGGCGCGCCCGCCCCGACCGGCAAGCTCGCCGGACGCTACGGCTTCACTGTGGACTGA
PROTEIN sequence
Length: 357
RDISPIARAIQEAVPGSEIVVRQLNEGVLLSGYVNSADDASRAVAIASQFLGKDGAVANSISIRAREQVMLKVTVAEVQRQILKQLGIDLAGGNNSGTFTFSTSNPFGLAGPIASNTASIGNSNFNATIRAFERANVLRTLAEPTLTAISGESAKFLAGGEFPILTSSSCTPATAGGVPICQTGYTYKQFGVGLTFTPVVLNEGRISLKVGTEVSDIDNKNTFTTTDGAVIPAFTVRRADTTVELASGASLVMAGMIQQNTKQVVNGTPGLMNIPILGQLFRSRDYQRDNTELMIMVTPYLAKAVDRKDIALPSDGFTDASDPSTFLLGRFNKIYGVRGAPAPTGKLAGRYGFTVD*