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berkeley_reactor_200306_biofilm_scaffold_95231_222

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 226569..226988

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.6
  • Coverage: 134.0
  • Bit_score: 205
  • Evalue 3.90e-50
Ribonuclease VapC n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LU38_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 74.6
  • Coverage: 134.0
  • Bit_score: 205
  • Evalue 2.80e-50
twitching motility protein PilT similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 132.0
  • Bit_score: 193
  • Evalue 2.40e-47

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Taxonomy

Rubrivivax benzoatilyticus → Rubrivivax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 420
GTGACGGCGGTGTACCTTCTGGACACGAATGTCGTTTCCGAACTTCGCCGCCTGCGTCCGCACGGAGCGGTGCTGAAATGGCTCCAAGGCATCGATGACGCCGATCTTCACCTCTCTGCGGTGACCATCGGCGAGATACAGGCGGGAATCGAGATAGCTCGGGAGCAGGACGGCGGCAAAGCCACCGAAATCGAGGCCTGGCTGGAGCAGGTCGCAGCAACATTCAATGTCCTGCCGATGGACGCTCGCGCATTCCGCTGCTGGGGACGGCTCATGCATCGCCGATCCGATCATCTGGTCGAGGACGCGATGATCGCGGCGACGGCACAGGTGCACGATCTCATCGTTGCAACCCGGAACGTCCGAGACTTTGACCCGTTCGGCGTTCGGACCTTCAATCCATTCGTCGCCTCGCCGTGA
PROTEIN sequence
Length: 140
VTAVYLLDTNVVSELRRLRPHGAVLKWLQGIDDADLHLSAVTIGEIQAGIEIAREQDGGKATEIEAWLEQVAATFNVLPMDARAFRCWGRLMHRRSDHLVEDAMIAATAQVHDLIVATRNVRDFDPFGVRTFNPFVASP*