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berkeley_reactor_200306_biofilm_scaffold_95231_263

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 269868..270077

Top 3 Functional Annotations

Value Algorithm Source
cold-shock protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037C0C96 similarity UNIREF
DB: UNIREF100
  • Identity: 82.6
  • Coverage: 69.0
  • Bit_score: 122
  • Evalue 1.50e-25
cspA-1; cold shock protein CspA 1 similarity KEGG
DB: KEGG
  • Identity: 81.2
  • Coverage: 69.0
  • Bit_score: 120
  • Evalue 9.60e-26
Cold shock protein CspA 1 {ECO:0000313|EMBL:AJD39972.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.2
  • Coverage: 69.0
  • Bit_score: 120
  • Evalue 4.80e-25

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Taxonomy

Rhizobium gallicum → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGAGCACGGGCACCGTCAAGTGGTTCAACTCCCAGAAGGGCTACGGCTTCATTCAGCCGGACGATGGCAGCAAGGACGTGTTCGTCCACATCAGCGCCGTCGAGCGTGCCGGTCTTTATGACCTTCGTGAAGGTCAGAAGATCAGCTATGAGTTGGTGCAGGATCGCCGTTCTGGTAAGATGTCTGCCGACAAGCTTCAGGCTGCCTGA
PROTEIN sequence
Length: 70
MSTGTVKWFNSQKGYGFIQPDDGSKDVFVHISAVERAGLYDLREGQKISYELVQDRRSGKMSADKLQAA*