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berkeley_reactor_200306_biofilm_scaffold_107365_2

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(1094..1972)

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulator, IclR family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HX27_BORPD similarity UNIREF
DB: UNIREF100
  • Identity: 56.8
  • Coverage: 292.0
  • Bit_score: 337
  • Evalue 1.30e-89
IclR family transcriptional regulator {ECO:0000313|EMBL:KDM66098.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 292.0
  • Bit_score: 373
  • Evalue 2.30e-100
IclR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 292.0
  • Bit_score: 337
  • Evalue 3.60e-90

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Taxonomy

Acidiphilium sp. JA12-A1 → Acidiphilium → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 879
ATGCTGCGGATCGAACGCCTCGGCGACGCCCGGGACGAGCTCGGCGAAGGCCCGCTCTGGGATGGGACCGAGCAGCGCCTCTATTGGATCGACAGCCTCGGGCGCCGCATCCACGCCTGCGACGCCGATGGCGGCAATCGGCGGAGCTGGCCGGTGCCCGAGCATATCGGCTCGCTGGCCCTGCGGCAGGGCGGCGGCGCCGTGCTGGCCTTGCGCGACGGCTTCTACGGCTTCGACTTCGGCACCGGCGCGGCGGTGAAGCTCGCCGACCCCGATCCCGGCAAGCCGCGTATCCGCCTCAACGACGGCAAGGTCGACCGCCAGGGCCGCTTCGTCGCCGGCTACATGGACTATGAGGAGAGCGATCCCCTTTGCTCGCTGTTCCGCCTCGATCCCGGCGGCACGGTCGAGCGGCTGGAAGAGGGCATCGTCTGCTCCAACGGGCCGTGCTGGAGCCCGGACGGGCGCATCTTCTACTTCGCCGACACCTATACCAGGGACATCTGGGCCTATGACTACGACATCGGCACCGGCCGGGTGGCCAACCGCCGTGTCTTCGCCTCCTTCCCCGCCTGCGGGCTGAGGGGGCTGCCGGACGGCGCCACCGTCGATGCCGAGGGCTATGTCTGGAGCGTCTCGGTGTACGAGGGCAAGCTCGTGCGCTTCGCGCCGGACGGCCGGCTCGACCGCACCGTCGGCCTGCCGGTCGAGAGCGCCACCAGCCTGAGCTTCGGCGGCCCGGACCTCGACATCGCCTTCGTCACCTCGATGGCCCGGCAGGTGAAGGGCCAATGGCCGCGCGAGCGCGAGGCCGGCGGCCTGTTCGCGGTGCATGGCCTCGGCGTCCGCGGCCTTCCCGAGCCGCGCTTCGCCGGCTGA
PROTEIN sequence
Length: 293
MLRIERLGDARDELGEGPLWDGTEQRLYWIDSLGRRIHACDADGGNRRSWPVPEHIGSLALRQGGGAVLALRDGFYGFDFGTGAAVKLADPDPGKPRIRLNDGKVDRQGRFVAGYMDYEESDPLCSLFRLDPGGTVERLEEGIVCSNGPCWSPDGRIFYFADTYTRDIWAYDYDIGTGRVANRRVFASFPACGLRGLPDGATVDAEGYVWSVSVYEGKLVRFAPDGRLDRTVGLPVESATSLSFGGPDLDIAFVTSMARQVKGQWPREREAGGLFAVHGLGVRGLPEPRFAG*