ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_101524_29

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 28033..30372

Top 3 Functional Annotations

Value Algorithm Source
Multidrug resistance efflux pump n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1J1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 73.9
  • Coverage: 770.0
  • Bit_score: 1128
  • Evalue 0.0
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIM30083.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.9
  • Coverage: 770.0
  • Bit_score: 1128
  • Evalue 0.0
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 67.4
  • Coverage: 777.0
  • Bit_score: 1028
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microvirga lotononidis → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2340
ATGCCGGCGGCGCCCCGCCCCGGCATCGTCGGCGTGGCGGCGCGCGAGGTGGCGTGGATCTGGCGCGACAGGGTGGCGCTGCTGCTCGTGGTCGGCATTCCGCTGCTCGCCTTCGCGCTCCTGGCCGCGACCTTCAGCAACGCGGTGATCCGCGATCTGAGGGTCGACGTCGTCGACCAGGATCGATCCCAGACCTCGATGACCTTCGTGCAGGCGATCGGAGCGGCCCCGGGCGTCACCGTGGCGGGGCGCTCGGCGGACCTCAGCGGCGCCATGCACGCCATCCGCTCGGGCGATGCGATCGCGGCGGTCTACATCCCCGAGAATCTCGAGCGCGACATCCTTGCCGGCCGGCGGCCGCAGATCGTCATCTTCTCCAACAAGCAGTTCTTCACGCCGGGCAACGTCGCGGCGAGCGCCCTGCAGGCCGCCGTCTCGGCGGCGGCCGCCGACCTGCCCGCCGGCGCCCGCAGCGCGGCCTTCACGCCGGGCCCGCTCGTCGTCGAGCAATATGTGCTGACCAATCCGGCCCTGAATTATGCCCAGTTCCTGCTGCGGGCGATCCTGCCGACGGTGCTGCATGTCGTCATCGCCATCGCCGGCGGCTATGCCGTCGGCTCCGAATTCGGCGCGCGCGGCGTGCGCGGCTGGCTGGCGGCGGCCGGCGGCCGGCCGCTGACCGCCCTGGTCGGCAAGCTCCTGCCCTATGCCGGCATCTTCCTGGTGATGATGGCGCTCGGGCTCGGCATCATCCACGGCCTCTACGGGATTCCGTTCCGGGGCGACCCGGTGATCATGGGGGCGGCCGCCTGCCTGCTGATCGTCGCCTATCTCTGCCTCGGCGCCTTCTTCCAGCTCCTGGTGCGCAATCTCCCCACCGGCCTCAGCCTGACGGCCATCGTCTGCTCGCCGGCCTTCGGCTTTGCCGGCGTCGGATTCCCGCTGCTGGCGATGGGCACCTTCGCCCGGGTCTGGGGCGCGCTGCTGCCGCTGCGCTGGTACATCCAGATCCTGTTCGACCAGGCCGCGCGCGGCGTCCCGGCCCGGGACTCGGTGGAGCCCTTCCTCATGCTGGCGGCCCTGGCGGCGCTGTATTTCGCGCTCGCCTGGCTCAGGCTCCATGCGATCGCGGCCAATCCTGACGGAGGGCCGGCGGAAGCCGCGGCTCCCGACCGGCCCGTGCGCCCGGGCATCGCCGCCGCCTTCGCGGCCGAATATGGCCGGGTGCTGCGCGACCGCGGCGTGTTCGGCCTGATCGTCCTGGGGCCGATCATCTACGGCGTGTTCTATCCGCAGCCCTATCTCGGGCAGCTCATCCGCGGCATCCCGATCGCCGTCGTCGACGATGACGGGTCGGACCTCAGCCGCACCATCGTCCAGACGCTGAACGCGGACGAGGCCATCACGGTGGCGCTGCGGCCGACCACCCTGGCGGAGGCGCAGGCGGCCCTCGCCCGCCGGGAGGTCTTCGGCATCCTCGGCATCCCGGCCGGCACCGAGCGCGACGTGCTGAAAGGCGAGAAGGCGCGGCTGCCCGCCTTCGTCGATTCGGCCTATTTCCTGCTCTACAACCGGACGCTGCAAGGCATCAGCGAGGCCGCGGGCGCCGTCACGGCGGACCTGATCGCGCGCAGCGCCCGCCCGGACGGCAGCCTCTACCGGGCCGCCCTGGCGCAGAGCTCGCCGATCGAGATCCTGAACCAGCCGCTGTTCAACCCGACCGGCGGCTATGCCAGCTATGTCGTGCCGGCCGCCTTCCTCCTGATCCTGCAGCAGACGCTGCTGATGGGCGCGGCGACGCTCGGCGGCGTGACCTTCGAGCAGGGCGGCCGCGAGGCGCGACGGCGCCGAGGCGGCCCGGCGGCGGTCATCGGCCAGGCGATCGCCCATCTCCTGCTGGCGCTTCCAGGCTTTGCGCTCTACCTCGTCGTGCTGCCACGGATCTACGGCTTTTCCGCCAGCGACCACGTGCTCGCCATGCTGGCGATGGCCATCCCCTTCATCCTGGCCGTCAGCTTCCTCGGCCAGTTCCTCGGCACCTGGTTCCGGCGGCGCGAGACAGCGGTGCTCATGCTGATCGCGATCAGCCTGCCGCTGTTCTTCCTGGTCGGCGTCGCCTGGCCGCCGGAGGCGATCCCGCCGATCCTGCGGTCGGTCAGCGCGGTCTTCCCGAGCACGTCGGGCATCCAGGGCTTGGTGCGCATCAACCAGATGGGGGCAGGCTTGGCGGACGTCTCGCAGGATTGGGCCAGGCTCTGGCTGCTGACGGGCATCTATGCGGTCCTCGCCATCGCGGCGTCCTGGATCGCCACGGCAGGGAGGACGCGGGATGAGCGTTGA
PROTEIN sequence
Length: 780
MPAAPRPGIVGVAAREVAWIWRDRVALLLVVGIPLLAFALLAATFSNAVIRDLRVDVVDQDRSQTSMTFVQAIGAAPGVTVAGRSADLSGAMHAIRSGDAIAAVYIPENLERDILAGRRPQIVIFSNKQFFTPGNVAASALQAAVSAAAADLPAGARSAAFTPGPLVVEQYVLTNPALNYAQFLLRAILPTVLHVVIAIAGGYAVGSEFGARGVRGWLAAAGGRPLTALVGKLLPYAGIFLVMMALGLGIIHGLYGIPFRGDPVIMGAAACLLIVAYLCLGAFFQLLVRNLPTGLSLTAIVCSPAFGFAGVGFPLLAMGTFARVWGALLPLRWYIQILFDQAARGVPARDSVEPFLMLAALAALYFALAWLRLHAIAANPDGGPAEAAAPDRPVRPGIAAAFAAEYGRVLRDRGVFGLIVLGPIIYGVFYPQPYLGQLIRGIPIAVVDDDGSDLSRTIVQTLNADEAITVALRPTTLAEAQAALARREVFGILGIPAGTERDVLKGEKARLPAFVDSAYFLLYNRTLQGISEAAGAVTADLIARSARPDGSLYRAALAQSSPIEILNQPLFNPTGGYASYVVPAAFLLILQQTLLMGAATLGGVTFEQGGREARRRRGGPAAVIGQAIAHLLLALPGFALYLVVLPRIYGFSASDHVLAMLAMAIPFILAVSFLGQFLGTWFRRRETAVLMLIAISLPLFFLVGVAWPPEAIPPILRSVSAVFPSTSGIQGLVRINQMGAGLADVSQDWARLWLLTGIYAVLAIAASWIATAGRTRDER*